Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02215 ATGGCTCCCCTTTCATGCTTCCTTGTTCTTTTTGCTCTTTCTCTTCTGACACCCAGTTTTGTTTCCTCCTCCGCAGTTCGAGACCCTGAGTTAGTTGTACAAGAGGTACAAAGAAGCATCAATGCCTCTAGAAGAAACTTGGGTTATTTATCATGCGGAACCGGCAACCCCATTGACGATTGCTGGCGCTGTGACCCCAATTGGGAGAACAACCGGCAAAGACTAGCCGATTGTGCCATTGGGTTCGGCAAGGACGCAATTGGGGGAAGAAATGGTCGAATCTACGTGGTCACCGACTCCGGCGACGACGACGCGGTGAACCCTAGGCCCGGAACCCTAAGGTACGCCGCCATACAGGACGAACCATTGTGGATTATTTTCAAGAGGGACATGGTGATCACACTAAAGCAAGAGCTTTTGGTGAACTCCTTCAAGACAATTGATGGAAGGGGTGCTAGTGTTCACATTGCTGGTGGGGGATGCATTACTATACACTATGTGAGTAACATTATTATTCATGGTATTAACATTCATGATTGCAAGCCAACGGGGAACACTAATATAAGAGACTCTCCACACCACTCTGGGTTTTGGACCCAATCGGACGGTGATGGTGTGTCCATCTTTAATTCGAAGCATGTTTGGGTTGATCATTGCTCCTTGTCTAATTGCCGTGATGGTCTCATTGATGCCATTCATGGATCCACGGCCATCACCATCTCCAACAATTACATGACCCATCATGACAAGGTTATGCTCTTGGGACATAGTGATTCGTACACACAAGACAAGGACATGCAGGTCACTATAGCATTCAATCATTTTGGAGAGGGCCTTGTCCAAAGAATGCCCAGGTGTAGACACGGGTATTTCCATGTGGTGAACAACGACTACACTCACTGGGAAATGTATGCCATTGGTGGGAGTGCCAACCCTACCATTAACAGCCAAGGGAACAGGTTCCTTGCCCCAAACAACAGGAACAGCAAGGAAGTAACCAAGCATGAGGATGCTCCACAGAGTGATTGGATGGGCTGGAATTGGAGGTCAGAGGGAGACATGTTCTTGAATGGAGCATACTTCAGGCAATCTGGTGCTGGTGCTTCTTCTAGCTATGCTAGGGCATCAAGTCTCAGTGCAAGACCATCTTCTCTTGTTGGCTCCATGACCATCACTGCTGGTGCACTTAACTGTAGAAAGGGCAACCGTTGCTGA 1215 0.4807 MAPLSCFLVLFALSLLTPSFVSSSAVRDPELVVQEVQRSINASRRNLGYLSCGTGNPIDDCWRCDPNWENNRQRLADCAIGFGKDAIGGRNGRIYVVTDSGDDDAVNPRPGTLRYAAIQDEPLWIIFKRDMVITLKQELLVNSFKTIDGRGASVHIAGGGCITIHYVSNIIIHGINIHDCKPTGNTNIRDSPHHSGFWTQSDGDGVSIFNSKHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPNNRNSKEVTKHEDAPQSDWMGWNWRSEGDMFLNGAYFRQSGAGASSSYARASSLSARPSSLVGSMTITAGALNCRKGNRC 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02215 404 PANTHER PECTATE LYASE 18-RELATED 26 402 IPR045032 GO:0030570
Pumo2g02215 404 SUPERFAMILY Pectin lyase-like 39 398 IPR011050 -
Pumo2g02215 404 Gene3D - 55 397 IPR012334 -
Pumo2g02215 404 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Pumo2g02215 404 PRINTS Pollen allergen Amb family signature 102 127 IPR018082 -
Pumo2g02215 404 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Pumo2g02215 404 PRINTS Pollen allergen Amb family signature 202 223 IPR018082 -
Pumo2g02215 404 PRINTS Pollen allergen Amb family signature 138 154 IPR018082 -
Pumo2g02215 404 PRINTS Pollen allergen Amb family signature 375 398 IPR018082 -
Pumo2g02215 404 PRINTS Pollen allergen Amb family signature 346 370 IPR018082 -
Pumo2g02215 404 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Pumo2g02215 404 FunFam Pectate lyase 55 397 - -
Pumo2g02215 404 SMART amb_all 130 327 IPR002022 -
Pumo2g02215 404 Pfam Pectate lyase 137 321 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02215 Pumo-Chr2 46638189 46641167 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02215 7 404 Polysaccharide Lyase AT5G63180 75.622 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02215 K01728 - gmx:100794814 800.816