Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02193 ATGGCGAAGCAGCAAACACAGAAAATCAATGCAAGCACTAACAATAACCACCTTAACACAACTAACACTGTCACCACCAAGGTGAAACGAACAAGGAGAAGTGTCCCTAGAGATTCCCCACCTAAACGCAGTTCAATATACAGAGGAGTCACTAGATCAGGCACCGATGGACAGGCCGATACTGAAGCTCATTTGTGGGACAAGAATTGCTGGAATGAGTCACAGAACAAGAAAGGACGACAAGGATGCTCTGCTCTTGAAGGTGCTTATGACGATGAAGAGGCCGCAGCACATGCTTACGATCTAGCAGCATTGAAATACTGGGGTCAAGATACCATTCTTAATTTTCCGTTATCGACCTACCAGAATGAACTGAAAGAAATGGAGGGTCAATCTAGGGAAGAGTATATTGGATCATTAAGGAGGAAAAGCAGCGGTTTTTCTCGTGGAGTTTCTAAATACAGAGGTGTTGCAAGACACCATCATAACGGAAGATGGGAGGCTCGGATTGGCAGGGTTTTCGGCAACAAATATCTTTACCTCGGAACTTATGCAACCCAAGAAGAAGCTGCCACAGCATATGACATGGCAGCTATTGAATATCGAGGACTCAACGCTGTGACCAATTTCGACCTTAGCCGCTACATCAAGTGGCTTAAGCCCAATAACAACAATAACAACATAGTCAACTCTAATAATCATATTGACCCTAACCCTAATTGTGAGACCAACTTTACCCCAAATTCTAATCAACAACAACAAGGATTCAATTTTTTCCATAGTCAAGAATCATTCCATAATGAAGAAGAAGCGACAATGACTCAGCCTCGGCCAGCTACTGCTGCCACGTCAGCCCTAGGACTTTTGCTTCAGTCATCCAAGTTTAAGGAGATGATGGAGAAGACTTCTGCCACAGATTTGTCAACACCGCCGCCATCGGAGTCGTCCGAGTTGCCGCCATGCACATTTCCTGATGACATTCAAACATATTTTGAGTGTGAAGATTCCAATAGATATGGAGAAGGGGATGATATCATGTTCAGCGAGCTCAACGGCTTTGTGCCCCCTATGTTCCATTGTGATGACTTTGAGGCTTGA 1098 0.4435 MAKQQTQKINASTNNNHLNTTNTVTTKVKRTRRSVPRDSPPKRSSIYRGVTRSGTDGQADTEAHLWDKNCWNESQNKKGRQGCSALEGAYDDEEAAAHAYDLAALKYWGQDTILNFPLSTYQNELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNNNNNNIVNSNNHIDPNPNCETNFTPNSNQQQQGFNFFHSQESFHNEEEATMTQPRPATAATSALGLLLQSSKFKEMMEKTSATDLSTPPPSESSELPPCTFPDDIQTYFECEDSNRYGEGDDIMFSELNGFVPPMFHCDDFEA 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02193 365 ProSiteProfiles AP2/ERF domain profile. 46 117 IPR001471 GO:0003700|GO:0006355
Pumo2g02193 365 MobiDBLite consensus disorder prediction 299 320 - -
Pumo2g02193 365 MobiDBLite consensus disorder prediction 1 59 - -
Pumo2g02193 365 MobiDBLite consensus disorder prediction 1 29 - -
Pumo2g02193 365 Gene3D AP2/ERF domain 152 213 IPR036955 GO:0003700|GO:0006355
Pumo2g02193 365 Gene3D AP2/ERF domain 46 119 IPR036955 GO:0003700|GO:0006355
Pumo2g02193 365 Pfam AP2 domain 152 203 IPR001471 GO:0003700|GO:0006355
Pumo2g02193 365 ProSiteProfiles AP2/ERF domain profile. 153 211 IPR001471 GO:0003700|GO:0006355
Pumo2g02193 365 SUPERFAMILY DNA-binding domain 70 119 IPR016177 GO:0003677
Pumo2g02193 365 FunFam AP2-like ethylene-responsive transcription factor 152 213 - -
Pumo2g02193 365 SUPERFAMILY DNA-binding domain 152 213 IPR016177 GO:0003677
Pumo2g02193 365 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 16 275 - -
Pumo2g02193 365 CDD AP2 152 213 IPR001471 GO:0003700|GO:0006355
Pumo2g02193 365 SMART rav1_2 153 217 IPR001471 GO:0003700|GO:0006355
Pumo2g02193 365 SMART rav1_2 46 123 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02193 Pumo-Chr2 45911182 45916086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02193 42 215 AP2-EREBP Transcription Factor Family AT5G57390 65.517 4.48e-75 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo2g02193 AP2 7.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02193 K09285 - gmx:100804555 553.903