Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02189 ATGATATCTGCTTTGCAGCATCCAAATCTGGTGAAGCTTTATGGCTGTTGCATTGAAGGAAACCAGTTGCTACTGATATACGAATACATGGAGAACAATAGTCTTGCTCGTGCACTTTTTGGTGAACAAGAACAGAAGCTGCACTTGGACTGGCCCACAAGAATGAAGATCTGTGTGGGGATAGCAAGGGGATTGGCTTATCTTCATGAGGAATCAAGGTTGAAAATAGTACACAGGGACATTAAGGCAACCAATGTCTTACTTGACAAGGATCTTAATGCCAAGATCTCTGACTTTGGTTTAGCTAAGCTTGATGAAGAAGAGAATACTCATATCAGTACACGGATAGCTGGAACAATTGGTTACATGGCTCCAGAATATGCTATGCGGGGTTACTTGACTGATAAAGCAGATGTATATAGCTTTGGAGTTGTAGCTTTAGAGATTGTTAGTGGAAAAAGTAACACAAAATACAGGCCAAAGGAGGAGTTTGTATATCTTCTAGATTGGGCATATGTTCTCCAAGAGCAAGGAAACCTTCTGGAATTGGTGGATCCAAGTCTTGGTTCAAAGTACTCCCCAGAGGAGACCATGAGAATGCTGAGCTTGGCACTCTTATGCACCAATCCATCTCCCACTCTCAGACCAACCATGTCATCTGTAGTAAGCATGCTTGAAGGAAAAATTCCAATCCAAGCCCCGATAATCAAGCGCAGTGAGAGCAGCCAAGGTGTAAGATTTAAAGCCTTTGAGTTGCTATCACAAGACAGTCAAACTCTTGTTTCTTCTTCATACTCTCAAGCAAGTGTGGAGCAAAGACACAAATCAGAAGATGGACCATGGGTTGACTCCTCCATATCTCTTCCAAGTGATTATTCTTCAACTAGTAAACTTGTTTAA 900 0.4178 MISALQHPNLVKLYGCCIEGNQLLLIYEYMENNSLARALFGEQEQKLHLDWPTRMKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTKYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLGSKYSPEETMRMLSLALLCTNPSPTLRPTMSSVVSMLEGKIPIQAPIIKRSESSQGVRFKAFELLSQDSQTLVSSSYSQASVEQRHKSEDGPWVDSSISLPSDYSSTSKLV 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02189 299 ProSitePatterns Serine/Threonine protein kinases active-site signature. 76 88 IPR008271 GO:0004672|GO:0006468
Pumo2g02189 299 CDD STKc_IRAK 1 227 - -
Pumo2g02189 299 ProSiteProfiles Protein kinase domain profile. 1 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g02189 299 Pfam Protein tyrosine and serine/threonine kinase 2 225 IPR001245 GO:0004672|GO:0006468
Pumo2g02189 299 Gene3D Phosphorylase Kinase; domain 1 1 30 - -
Pumo2g02189 299 FunFam Putative LRR receptor-like serine/threonine-protein kinase 30 237 - -
Pumo2g02189 299 MobiDBLite consensus disorder prediction 264 299 - -
Pumo2g02189 299 SMART serkin_6 1 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g02189 299 Gene3D Transferase(Phosphotransferase) domain 1 31 239 - -
Pumo2g02189 299 SUPERFAMILY Protein kinase-like (PK-like) 2 238 IPR011009 -
Pumo2g02189 299 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 262 - -
Pumo2g02189 299 PIRSF TyrPK_CSF1-R 1 36 - -
Pumo2g02189 299 PIRSF TyrPK_CSF1-R 31 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02189 Pumo-Chr2 45805119 45806973 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02189 1 290 Receptor kinase-like Gene Family AT1G53440 78.157 7.84e-163 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo2g02189 PK_Tyr_Ser-Thr 2.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02189 - - gmx:100815226 565.074