Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02178 ATGGCGCTGCTGTGTGGTTCAACCTCCGTGACTCCATTCCTTTCTTCTCACAAGAACGTTGCCGTCACAACCTCAACAAAATCTTCCTTTGTTGGCTTCCAATTGCAGCTTTCAAAGCTTACATTATCCTCCTCTGTTCGAACCCTTTTACCCGCCGCAACTTCCCGAGTCCGTTGCCAGCAAGAGTCTACTAATGCTGCTACTGCTACTACTACTACTACTACCCCCGTCGCAGAAGACCCGCGCTTCGCGTGCGTCGAACCCGAGCCCCGATTCAAAGGCCCGGACATTTGGAACAAGAGCTGGTATCCAAAAGCTGCAGATCATGTGAATACAGAGAAAACATGGTATGTTGTTGATGCAACAGACAAAGTTCTTGGAAGACTAGCATCAACTATTGCTATTCACATCCGAGGGAAAAATTTGGCAACCTACACACCCAGTGTGGACATGGGTGCGTTTGTAATTGTGGTAAATGCTGAAAAGGTTGCTGTATCTGGGAAAAAGAGGACCCAAAAGCTTTATAGGAGGCACTCTGGACGACCCGGTGGTATGACGGTGGAGACATTTGCCCAGCTACAAAACAGAATTCCTGAAAGAATTATTGAACATGCTGTTCGTGGCATGCTTCCAAAAGGAAGGCTTGGCAGGAGACTATTCACCCACCTGAAGGTTTATAAGGGCCCAGATCATCCACATCCGGCACAGAAGCCCATTGAGTTGCCAATAAGGGATAAGAGAATAAATTTGCAGAAATAG 759 0.473 MALLCGSTSVTPFLSSHKNVAVTTSTKSSFVGFQLQLSKLTLSSSVRTLLPAATSRVRCQQESTNAATATTTTTTPVAEDPRFACVEPEPRFKGPDIWNKSWYPKAADHVNTEKTWYVVDATDKVLGRLASTIAIHIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFAQLQNRIPERIIEHAVRGMLPKGRLGRRLFTHLKVYKGPDHPHPAQKPIELPIRDKRINLQK 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02178 252 SUPERFAMILY Ribosomal protein L13 110 244 IPR036899 GO:0003735|GO:0005840|GO:0006412
Pumo2g02178 252 FunFam 50S ribosomal protein L13 100 243 - -
Pumo2g02178 252 NCBIfam 50S ribosomal protein L13 110 241 IPR005823 GO:0003735|GO:0005840|GO:0006412
Pumo2g02178 252 Pfam Ribosomal protein L13 114 232 IPR005822 GO:0003735|GO:0005840|GO:0006412
Pumo2g02178 252 Hamap 50S ribosomal protein L13 [rplM]. 116 251 IPR005822 GO:0003735|GO:0005840|GO:0006412
Pumo2g02178 252 CDD Ribosomal_L13 116 229 IPR005822 GO:0003735|GO:0005840|GO:0006412
Pumo2g02178 252 Gene3D Ribosomal protein L13 105 248 IPR036899 GO:0003735|GO:0005840|GO:0006412
Pumo2g02178 252 ProSitePatterns Ribosomal protein L13 signature. 206 228 IPR023563 GO:0003735|GO:0005840|GO:0006412
Pumo2g02178 252 PANTHER RIBOSOMAL PROTEIN L13 101 248 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02178 118 251 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 31.852 2.67e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02178 K02871 - gmx:100305981 444.506