Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02175 ATGAAGATTCAGTGCAACGTGTGCGAGGCCGCGGAGGCCAAGGTTCTGTGCTGCGCGGACGAGGCCGCGCTGTGCTGGGAATGCGACGAGAAGGTTCACGCCGCCAACAAGCTCGCCACCAAGCACCAGAGAGTTCCACTTTCTCTCTCTGCCTCCCAGATGCCCTTGTGTGACATATGCCAGGAAATGGTTGGTTATTTCTTCTGTTTAGAGGATCGAGCTTTGCTATGTAGAAATTGTGATGTATCTATACACACGGCAAATGCCTGTGTCACTGGTCATCAAAGGTTTTTGCTTACTGGTGTGAGAGTAGGCCTAGAAGCTACTGAGCGTGGTTCTTCCTCATCTTCTGTGAAGTCACAGTCTGGGGAGAAAATGTCTGATGCTAAATCTTCATCCATCTCCAGATCCAGAAATGTTTCCTCACTGCCCCAACAATCAAATGTCAATGAAGTGTTACCCCTCCAAATGCGAGGAGTTGAGGAGTTTCCACCAAACAATTACTCGGGTTATACTTCTGGAAATGTCTCACAATGGCCCATTGAAGAATTTCTTGGGTTAAATGAATTCAGCCAGTATTATAATTACATGGATGGATCATCTAAGGCTGACAGTGGTAAACCCGGGGATTCTGATTTGTCTGTTTTGAGGTCCAGTGAAGAGGAAATAGACGACGATGGCTTCTTGGGGCGTGTTCCAGATTCATCCTGGACAGTTCCTCAGATCCCTTCCCCTCCTACAGCTTCGGGGTTATATTGGCCAAAAATCCCTCAATATACATCTGACAATGTCATGTTTGTTCCTGACATATGCTTTTCTCGCGTGCGACAGCCCCACCATGCTCAGCATAATTCTACTCTTTCGAAACGGCGTAGGCAACAATAA 885 0.4723 MKIQCNVCEAAEAKVLCCADEAALCWECDEKVHAANKLATKHQRVPLSLSASQMPLCDICQEMVGYFFCLEDRALLCRNCDVSIHTANACVTGHQRFLLTGVRVGLEATERGSSSSSVKSQSGEKMSDAKSSSISRSRNVSSLPQQSNVNEVLPLQMRGVEEFPPNNYSGYTSGNVSQWPIEEFLGLNEFSQYYNYMDGSSKADSGKPGDSDLSVLRSSEEEIDDDGFLGRVPDSSWTVPQIPSPPTASGLYWPKIPQYTSDNVMFVPDICFSRVRQPHHAQHNSTLSKRRRQQ 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02175 294 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Pumo2g02175 294 CDD Bbox1_BBX-like 5 47 - -
Pumo2g02175 294 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 277 - -
Pumo2g02175 294 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pumo2g02175 294 SMART bboxneu5 52 99 IPR000315 GO:0008270
Pumo2g02175 294 MobiDBLite consensus disorder prediction 110 148 - -
Pumo2g02175 294 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pumo2g02175 294 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Pumo2g02175 294 Gene3D Classic Zinc Finger 1 92 - -
Pumo2g02175 294 FunFam B-box zinc finger protein 22 1 93 - -
Pumo2g02175 294 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02175 Pumo-Chr2 45319246 45323310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02175 1 293 C2C2-CO-like Transcription Factor Family AT1G78600 45.808 1.29e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Pumo2g02175 zf-B_box 6.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02175 - - gmx:100808889 542.347