Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02171 ATGGCAATTCCTTCTCTTCTTACGCTTCTTATTTGCAAGCTATTATTATTACTCTTGTCTCAAATTAGCTACGCAACAGACACCATCACAGAGGTTCAGTCACTTTCCGATAATGGCAGCACCTTGGTTTCCAACGACGGCACCTTTGAGTTGGGTTTCTTCAATCCCGGCAGTTCCAATAACCGCTACGTCGGAATCTGGTACAAAAACATCCCTCAAACAGTGGTTTGGGTCGCCAACCGTGACAACCCGATCAGAGAAAACAACTCCAGCAAGTTGGCCATAAGCCAAGACGGAAACCTCGTACTTCTCAGCTACATTAACCAGTCTCTTCTTTGGACAACAAACGCAACAAAAAAAGCTTCGAGTCCGATCGTGCAGCTCTTGAACACCGGAAACTTGGTAGTAAAAGATAATAACAACGATGAAGAGAGTGTTTTTCTGTGGCAAAGCTTCGACCATCCTTGTGACACGCTGTTGTCGGGGATGAAGCTCGGGTGGGACTTGAGAACGGGTCTTAACCGGCGTCTCACCGCTTGGAAGAACTGGGACGACCCGTCTTCGGGGGAGCTCGTTTGGGAAGTGGTGATCGGAAACAACCCCGAAATCGTGATGTGGAAGGGCAAAACTGATTACTTTAGGACCGGGCCTTATACTGGGAACATGTTCAGTGGAGTGTATGCGCCCAGGAATAACCCACTTTACGATTGGAGATTTGTCAATAACCAAGACGAGGTGTATTTTCAATACACCCTCAGGAACAGTTCTGTGATTTCTATAATTGTAATGAACCAAACCCTTTATCTTCGTCAACGCCTCACTTGGATTCCTGATTCCAATTCTTGGAGTGTTTACCAATCCTTGCCGCTAGATAGTTGCGATGTTTACAACACTTGTGGGTCCAATGGAATTTGTTTGATTGCTGGGTCGCCAATTTGTCAGTGCTTAGAGGGGTTCGAGCCGAAATCGCCCCAACAGTGGAACGCCATGGATTGGAGACAGGGGTGTGTGCGCAGTGAAGAGTGGAGCTGTGGGGTCAAAAACAAAGATGGTTTTCGTAGAATTGCTAGTGTGAAATTGCCAAACACTACGTTTTCTTGGGTTAGTGAAAGTTTGACACTTGAGGAGTGTAGGGCCAAATGTTTGGAAAATTGTTCGTGCACGGCTTATTCGAACTTGGACGTGAGAGGAGGAGGTAGCGGGTGTTCCATTTGGGTTGGTGAACTTGTTGACATGAGAGTTGTAGAAAGTGGGCAAGATTTATATGTTCGAATGGCCACTTCGGATACGGGTGGTAAACATGGGCAGCGGAAAAAAATAATCATGGCAGTTACAATCACTGCAGCTTCATTGGTCCTTGTGATGTTATTAGCATTCTGCATTTACATGACCAAGAAAAAATATAAAGGAAAAAAAGAGACAACGATGTCGATAGAGCAGAAAGACCAAGGCGGGCAAGAAGACTTGGAGCTTCCTTTCTTTGACCTTGCTACCATAGTTAATGCCACTAATAATTTTTCAATTGACAATAAGCTCGGTGAAGGTGGTTTTGGGCCAGTATACAAGGGTTTATTCGTAGACGGACAAGAAATTGCAATCAAGAGGCTTTCAAGAAGTTCAGGACAAGGATTGAAAGAATTTAGGAATGAAGTTATATTGTGTGCTAAACTTCAACATCGAAATCTTGTTAAGGTTCTTGGTTATTGCATTGAAGGAGAAGAAAAAATGCTACTCTATGAATACATGCCCAACAAAAGTCTTGATTTAATTCTTTTTGATTCCATTCAAAGTAAATTATTAGATTGGCCAATGCGTTTTAACATTTTGAATGCAATTGCTCGGGGGCTTCTTTATCTTCATCAAGATTCTAGATTAAGGATCATACACAGAGATCTAAAAGCAAGTAATATATTACTAGACAATGATATGAATCCAAAAATTTCAGATTTTGGCCTTGCTAGAATGTGTGGAAGTGATCAAGTGGAAGGGAATACAAGCATCATAGTTGGAACACATGGTTACATGGCACCTGAATATGCCATGGATGGATTATTCTCTATAAAATCAGACGTGTTCAGCTTTGGAGTATTAATGCTAGAAATTGTTAGTGGAAAGAAAAATAGAGCATTTACCTACCAAGACCACGATCATAATCTTATTGGTCATGCATGGAGATTATGGAAAGATGGTACACCAGAGCAATTTATTGATGCTTGTTTGGCAAACTCATATAGTATATTTGAAGTTGTACGGTGCATTCAAATTAGTCTTCTATGTCTACAACATCATCCATATGATAGGCCGAACATGACATCAGTTGTTGTGATGTTGTCTAGTGAAAATGCTTTACTTGAACCCAAGGAGCCTGGTTTCTTAATTAGAAGGGTCTCAAATGAAGGAGAACAATCTTCTAATAGACAATCTTCTTCAATCAATGAAGTAACTGTCTCACTTTTAAATGCTAGATAA 2469 0.4147 MAIPSLLTLLICKLLLLLLSQISYATDTITEVQSLSDNGSTLVSNDGTFELGFFNPGSSNNRYVGIWYKNIPQTVVWVANRDNPIRENNSSKLAISQDGNLVLLSYINQSLLWTTNATKKASSPIVQLLNTGNLVVKDNNNDEESVFLWQSFDHPCDTLLSGMKLGWDLRTGLNRRLTAWKNWDDPSSGELVWEVVIGNNPEIVMWKGKTDYFRTGPYTGNMFSGVYAPRNNPLYDWRFVNNQDEVYFQYTLRNSSVISIIVMNQTLYLRQRLTWIPDSNSWSVYQSLPLDSCDVYNTCGSNGICLIAGSPICQCLEGFEPKSPQQWNAMDWRQGCVRSEEWSCGVKNKDGFRRIASVKLPNTTFSWVSESLTLEECRAKCLENCSCTAYSNLDVRGGGSGCSIWVGELVDMRVVESGQDLYVRMATSDTGGKHGQRKKIIMAVTITAASLVLVMLLAFCIYMTKKKYKGKKETTMSIEQKDQGGQEDLELPFFDLATIVNATNNFSIDNKLGEGGFGPVYKGLFVDGQEIAIKRLSRSSGQGLKEFRNEVILCAKLQHRNLVKVLGYCIEGEEKMLLYEYMPNKSLDLILFDSIQSKLLDWPMRFNILNAIARGLLYLHQDSRLRIIHRDLKASNILLDNDMNPKISDFGLARMCGSDQVEGNTSIIVGTHGYMAPEYAMDGLFSIKSDVFSFGVLMLEIVSGKKNRAFTYQDHDHNLIGHAWRLWKDGTPEQFIDACLANSYSIFEVVRCIQISLLCLQHHPYDRPNMTSVVVMLSSENALLEPKEPGFLIRRVSNEGEQSSNRQSSSINEVTVSLLNAR 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02171 822 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 582 785 - -
Pumo2g02171 822 CDD B_lectin 38 155 IPR001480 -
Pumo2g02171 822 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 22 152 - -
Pumo2g02171 822 Pfam S-locus glycoprotein domain 213 323 IPR000858 GO:0048544
Pumo2g02171 822 Pfam Protein tyrosine and serine/threonine kinase 507 775 IPR001245 GO:0004672|GO:0006468
Pumo2g02171 822 ProSiteProfiles Bulb-type lectin domain profile. 26 149 IPR001480 -
Pumo2g02171 822 SMART serkin_6 506 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g02171 822 CDD PAN_AP_plant 343 426 - -
Pumo2g02171 822 ProSiteProfiles Protein kinase domain profile. 506 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g02171 822 Pfam PAN-like domain 344 412 IPR003609 -
Pumo2g02171 822 CDD STKc_IRAK 512 777 - -
Pumo2g02171 822 Gene3D Transferase(Phosphotransferase) domain 1 582 787 - -
Pumo2g02171 822 MobiDBLite consensus disorder prediction 798 822 - -
Pumo2g02171 822 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 768 - -
Pumo2g02171 822 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Pumo2g02171 822 Gene3D Phosphorylase Kinase; domain 1 462 581 - -
Pumo2g02171 822 ProSiteProfiles EGF-like domain profile. 289 325 IPR000742 -
Pumo2g02171 822 ProSiteProfiles PAN/Apple domain profile. 344 426 IPR003609 -
Pumo2g02171 822 SMART blect_4 33 155 IPR001480 -
Pumo2g02171 822 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 470 581 - -
Pumo2g02171 822 Pfam Domain of unknown function (DUF3403) 781 822 IPR021820 GO:0004674
Pumo2g02171 822 PIRSF SRK 1 822 IPR024171 GO:0004674
Pumo2g02171 822 SUPERFAMILY Protein kinase-like (PK-like) 489 804 IPR011009 -
Pumo2g02171 822 Pfam D-mannose binding lectin 74 181 IPR001480 -
Pumo2g02171 822 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 186 IPR036426 -
Pumo2g02171 822 Gene3D Hepatocyte Growth Factor 343 427 - -
Pumo2g02171 822 SMART ntp_6 347 425 IPR003609 -
Pumo2g02171 822 Gene3D - 20 152 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02171 Pumo-Chr2 45166632 45171363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02171 453 818 Receptor kinase-like Gene Family AT4G23150 52.589 5.22e-126 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo2g02171 PK_Tyr_Ser-Thr 2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02171 - - gmx:112997759 1434.47