LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo2g02169	ATGAACCAAACTCTCTATCTTCGTCACCGCCTTACTTGGATCCCCGAGGCCGAAGCTTGGAGCATTTACCAATCCTTGCCGCGAGATAGTTGTGACGTGTATAACACTTGTGGGTCCAATGGAATTTGTGTGATTGCTGGGTCGCCGATTTGCGAGTGCTTGGATGGGTTCGAGCCGAAATCGCCCCTGCAGTGGAACGCGATGGACTGGAGAGAAGGATGTGTGCGTAGTGAAGAGTGGAAATGTGGGGTGAAAAATAAAGATGGTTTTCGAAGATTTGCTGGTATGAAATTGCCAAATACTACATTTTCTTGGGTTAATGAAAGTATGACACTTGAGGAGTGTAGGGCCAAATGCTTGGAAAATTGTTCGTGCAAGGCTTATTCGAACTTGGACACGAGGGGAGGAGGTAGTGGGTGCTCTATTTGGGTTGGTGAGCTTGTTGATTTGAGAGTTATAGAAAGTGGGCAAGATTTGTATGTTCGAATGGCCACTTCGGATACAGCAGATGGTAAACATGGAGAACGGAAAAAGGTAATCGTGGCGGTTTCAGTCACAGCATCGTTGGTGCTTGTGATGTTATTAGCATTTTGCATTTACATCACAAAAAGAAAATATAAAGGGAAAACGAAAACAAGAATGTTGACAGAAGATAAAGATGGAGGCAGACAAGAAGATTTGGAGCTTCCTTTCTTTGATCTTGCTACAATAGTTAATGCTACTAATAATTTTTCAATTGAGAATAAGCTCGGTGAAGGTGGTTTTGGTCCTGTATACAAGGGTATTTTAGTAGATGGACAAGAAATTGCAATCAAAAGGCTTTCACGAAGTTCAGGACAAGGATTAAAAGAATTTAGAAATGAAGTTATATTGTGTGCCAAACTTCAGCACCGAAATCTTGTCAAGGTTTTGGGTTATTGCATTCAAGGAGAAGAGAAAATGTTACTCTATGAATACATGCCCAACAAAAGTCTCGATTTATTTCTTTTTGATTCGGAGCAAAGTAAATTTTTAAATTGGCCACTGCGCTTTAACATTTTGAATGCGATTGCTCGGGGGCTTCTTTATCTTCATCAAGATTCTAGATTAAGGATCATACACAGAGATCTAAAGGCAAGTAATATTTTATTAGACAATGATATGAATCCAAAAATTTCAGATTTTGGCCTTGCAAGAATGTGTGGAAGCGATCAAGTTGAAGGGAGTACAAGTATCATAGTTGGGACACATGGTTACATGGCACCTGAATATGCCATTGATGGACTATTCTCAACAAAATCGGATGTGTTTAGCTTTGGAGTGTTATTGCTAGAAATTGTTAGTGGAAAGAAAAGCAGAGCATTTACCTACCAAGACAACAATCATAATCTTATTGATCATGCATGGAGATTGTGGAAAGAAGGTACTCCAGAGCAATTGATTGATGCACATTTGGCAAACTCGTGTAATATATTTGAAGTTATACGGTGCATTCAAATTAGTCTTCTATGTCTACAACATCATCCAGACGATAGGCCGAACATGACATCAGTTGTTGTGATGTTGACCAGTGAAAATGCTTTACAAGAACCTAAGGAGCCTGGTTTCTTAATTAGAAGGGTTTCAAATGAAGGAGAACAATCTTCTAATAGACAAACATCTTCTTCAATCAATGAAGTATCTATCTCACTTTTAAATGCTAGATAA	1686	0.3915	MNQTLYLRHRLTWIPEAEAWSIYQSLPRDSCDVYNTCGSNGICVIAGSPICECLDGFEPKSPLQWNAMDWREGCVRSEEWKCGVKNKDGFRRFAGMKLPNTTFSWVNESMTLEECRAKCLENCSCKAYSNLDTRGGGSGCSIWVGELVDLRVIESGQDLYVRMATSDTADGKHGERKKVIVAVSVTASLVLVMLLAFCIYITKRKYKGKTKTRMLTEDKDGGRQEDLELPFFDLATIVNATNNFSIENKLGEGGFGPVYKGILVDGQEIAIKRLSRSSGQGLKEFRNEVILCAKLQHRNLVKVLGYCIQGEEKMLLYEYMPNKSLDLFLFDSEQSKFLNWPLRFNILNAIARGLLYLHQDSRLRIIHRDLKASNILLDNDMNPKISDFGLARMCGSDQVEGSTSIIVGTHGYMAPEYAIDGLFSTKSDVFSFGVLLLEIVSGKKSRAFTYQDNNHNLIDHAWRLWKEGTPEQLIDAHLANSCNIFEVIRCIQISLLCLQHHPDDRPNMTSVVVMLTSENALQEPKEPGFLIRRVSNEGEQSSNRQTSSSINEVSISLLNAR	561

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo2g02169	561	SMART	serkin_6	244	515	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo2g02169	561	CDD	PAN_AP_plant	85	164	-	-
	Pumo2g02169	561	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	365	377	IPR008271	GO:0004672\|GO:0006468
	Pumo2g02169	561	Gene3D	Hepatocyte Growth Factor	81	165	-	-
	Pumo2g02169	561	ProSiteProfiles	Protein kinase domain profile.	244	521	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo2g02169	561	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	36	541	-	-
	Pumo2g02169	561	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	208	319	-	-
	Pumo2g02169	561	Pfam	PAN-like domain	82	150	IPR003609	-
	Pumo2g02169	561	Pfam	Protein tyrosine and serine/threonine kinase	245	513	IPR001245	GO:0004672\|GO:0006468
	Pumo2g02169	561	Pfam	S-locus glycoprotein domain	9	61	IPR000858	GO:0048544
	Pumo2g02169	561	CDD	STKc_IRAK	250	516	-	-
	Pumo2g02169	561	SMART	ntp_6	85	163	IPR003609	-
	Pumo2g02169	561	Gene3D	Phosphorylase Kinase; domain 1	205	319	-	-
	Pumo2g02169	561	Pfam	Domain of unknown function (DUF3403)	517	561	IPR021820	GO:0004674
	Pumo2g02169	561	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	320	523	-	-
	Pumo2g02169	561	ProSiteProfiles	PAN/Apple domain profile.	82	164	IPR003609	-
	Pumo2g02169	561	Gene3D	Transferase(Phosphotransferase) domain 1	320	528	-	-
	Pumo2g02169	561	ProSiteProfiles	EGF-like domain profile.	27	63	IPR000742	-
	Pumo2g02169	561	SUPERFAMILY	Protein kinase-like (PK-like)	227	536	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo2g02169	Pumo-Chr2	45153593	45156163	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo2g02169	165	532	Receptor kinase-like Gene Family	AT4G23230	52.575	1.99e-128	387

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pumo2g02169		PK_Tyr_Ser-Thr	2e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo2g02169	-		-	gmx:100776310	1041.57