Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02156 ATGGATTCCTCCACCACATTGCTCAACGACCTTCCTCCCCTGAAAAGGTTAAGACTCATGCAACAACAACAACAACAACAGAAAGAACATTTTTATGACTCTTCTTCCCCTTTACCCGCCAAAAAACGCAAAGAGTCTCGAATCTCATCTCCACCATCTCCCACCACCACTTCCACCGTTTATAACTATTCCCTCCCCGCCAAGAAGAGAGTGTGGGCTCCACAACCGCAAAGCCCTTCCTCCAACGACGCCGTTCCCACCTTCGACCTCAACGCCGAACCATCCCTCGAAGACTCCGAAAGTGAAGGCGAAGGCGACGACGGGATTTTATGCTGTGTGTGCCAGAGCACGGACGGCGACCCTGCGGATCCAATAGTCTTCTGCGACGGGTGCGACCTCATGGTGCACGCCTCCTGCTACGGCTACCCCTTGTCCAAAGCCATCCCCGACGGAGACTGGTTTTGCGAACGCTGTCGTTTCGCAAAGGACAGCAACAACAACAACACAACCAGTTGCGCGCTGTGCCCCGTTAACGAGGGGGCGATGAAGCGGACCACCGAGGGCGCGTGGGCGCACGTGGTGTGCGCGGTGTTCGTGCCGGAGGTGTTCTTCCTCGACCCCGAAGGGAGGGAGGGGATCGACTGCTCCAAGGTTCCCAAGAAGAGGTGGTCCCAGAATTGCTACGTCTGCGGCTGCTGCGACGGGTGTGCTCTGGTTTGTTCCGAGCCCAAGTGCGGGTTGGGATTTCATGTCACCTGCGCCTTGAAGGAAGAGCTCTGGATTGAGTACAAGGAAGGGAAGAAGGGGGACACCATCGTTGCTGGCTTCTGCAAAAAACACACTCAACTCTGGGAAAAGCAACAGCTATCCGGGAAGTACAAAATTGTTGCGGCTGAAGATGAAAAGTAG 909 0.5534 MDSSTTLLNDLPPLKRLRLMQQQQQQQKEHFYDSSSPLPAKKRKESRISSPPSPTTTSTVYNYSLPAKKRVWAPQPQSPSSNDAVPTFDLNAEPSLEDSESEGEGDDGILCCVCQSTDGDPADPIVFCDGCDLMVHASCYGYPLSKAIPDGDWFCERCRFAKDSNNNNTTSCALCPVNEGAMKRTTEGAWAHVVCAVFVPEVFFLDPEGREGIDCSKVPKKRWSQNCYVCGCCDGCALVCSEPKCGLGFHVTCALKEELWIEYKEGKKGDTIVAGFCKKHTQLWEKQQLSGKYKIVAAEDEK 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02156 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 168 IPR013083 -
Pumo2g02156 302 ProSitePatterns Zinc finger PHD-type signature. 111 158 IPR019786 -
Pumo2g02156 302 MobiDBLite consensus disorder prediction 1 105 - -
Pumo2g02156 302 ProSiteProfiles Extended PHD (ePHD) domain profile. 169 281 IPR034732 -
Pumo2g02156 302 MobiDBLite consensus disorder prediction 74 88 - -
Pumo2g02156 302 CDD PHD_BRPF_JADE_like 110 158 - -
Pumo2g02156 302 MobiDBLite consensus disorder prediction 49 64 - -
Pumo2g02156 302 Pfam PHD-zinc-finger like domain 171 280 - -
Pumo2g02156 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 283 IPR013083 -
Pumo2g02156 302 SMART PHD_3 110 159 IPR001965 -
Pumo2g02156 302 SMART PHD_3 226 281 IPR001965 -
Pumo2g02156 302 ProSiteProfiles Zinc finger PHD-type profile. 108 161 IPR019787 -
Pumo2g02156 302 PANTHER PHD FINGER PROTEINS 102 281 - -
Pumo2g02156 302 SUPERFAMILY FYVE/PHD zinc finger 96 164 IPR011011 -
Pumo2g02156 302 MobiDBLite consensus disorder prediction 18 33 - -
Pumo2g02156 302 Pfam PHD-finger 111 160 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02156 Pumo-Chr2 44739007 44741859 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02156 19 302 C2H2 Transcription Factor Family AT3G14740 49.691 4.22e-101 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pumo2g02156 zf-HC5HC2H_2 4.4e-26 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02156 K11380 - gmx:100786929 478.789