Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02154 ATGGCTGTAAGATCATGTTCCGGTGCATTCACCTACGATGTGTTCCTCAGCTTCAGAGGGGAAGACACACGCCATGGCTTTACCGGAAATCTCTACAAACATCTTTTTGACAGGGGAATCCACACTTTCATTGATGATGAGGAGCTTCAGAGAGGAGAGCAAATAACACCATCACTTCTCAAGGCAATTCAAGAGTCCAGGATTATCATCCCTGTGCTCTCTATCAACTATGCTTCTTCCTCATTTTGCTTAGATGAACTTGCCAACATCCTTCACTGCGCTGAGAGGAAAGGAAACTTGGTTTTGCCAGTTTTTTATAAAGTGGATCCTTCTGATGTTAGACACCAAAAAGGTAGTTATGGAGAGGCATTGGCTAAGCATGAGGAAAGGTTCAAAGCTAAGAAGGAGAACTACAACCATAACATGGAGAACTTGGAGAAATGGAAGGTGGCTCTTCATCAAGTGTCTAACTTGTGTGGCTATCATTTCAAACACGGAGATGGATATGAATACGAGTTTATTGGGAGGATTGTTGAGTGGGTCTCTAGCAAGATTGATCGTGCTCCTTTACATGTTGCGGATTACCCGGTTGGATTGGAGTCACAAGTGCTAAAAGTAAAGAGACTTTTGGATGTTGGATCTGATGATGGTATCCACATGATAGGGATCCATGGAATTGGTGGGATAGGAAAATCAACACTTGCCCGAGCAGTTTATAATTCGCTTGCTGATGATTTTGATGGTTCATGTTTTCTTGAAAATGTGAGAGAAAAATCAAATAAACATGGGTTACAACACCTCCAAAGCGTCCTTCTTTCAGGAATACTTGGAGAGAAGGAAACCAACATAGCAAGTCTTGAACAAGGAACTTCCATGATACAACATAGGCTCCAGCGGAAAAAGGTTCTCTTGGTTCTAGATGATGTTGACAAGCACAAGCAATTACAAGCAATTGTTGGAAGACCTGATTGGTTTGGTCATGGCAGCAGAGTCATTATAACCACACGGGACAAACAACTGCTAGCATCTTATGAGGTTAAAAGAACATATAAGGTGAAGAAATTGAATAAGAACGATGCTCTTCAATTGCTTAAATGGAAAGCTTTTAAAAAGGAAAAGGTTGATCCAAGTTTTGTGGAGGTCTTGAATTACGTAGTAACTTATGCTTCTGGCCTTCCATTGGCTTTGGAAGTAATAGGTTCCAACTTGTTTGGAAAAAGTATAGAAGAATGGAAATCTGCTCTCAAAAAATATAAAAGAATTCCAAATAAACAAATTCTGAAGATACTTAAAGTAAGCTTTGATGCTTTGGAAGAAGAAGAGAAGAGTGTTTTTCTTGACATTGCCTGTTGCTTTAAAGGCTATGAAATGACAGAGGTTGAAGATATACTTTGTGCTCATTATGGTGACTGCATGAAATATCATATTGGCTTATTGGTTGAAAATTCTCTCGTAAAGCTTCGTTATGGTAAAGTTACATTGCATGACTTGATAGAGAACATGGGTAAAGAAATTGTTCGACAGAAATCACCAAAAGAGCAAGGGAAGCGAAGTAGATTATGGTTACCAGAAGATATAATTCAAGTTTTGGAAGACAACTCGGGAACCCGTGAAACTGAAATCATATGTCTGGATTTCCCCGTATTTGAAAAAGAAGAAATAGTAGAATGGAATAGAAAGGCCTTCAAGAAGATGAAAAACCTCAAAACACTTATTATTAAAAATGTTCATTTTTCCAAAGGTCCCAAATATCTTCCTAATAGTTTGAGAGTATTGGAATGGTGGAGATATCCTTCACATTGTTTACCATCTGATTTTCATCCGAAGAAACTTGCCATATGCAAGTTACCTAATAGTTGCTTTACATCACTTGAGTGGACTGGCTTATTGAAGGCATGTTTAATGAGTACAAAGTTTGTGAATCTAAGAGTTCTGAAGTTTGACGATTGTATATGTTTAACACAGATACCTGATGTATCTGGTCTACCAAATTTGGAGAAATTTTCATTTAAATATTGTGAGAATTTAGTTGCAGTTCATGACTCGACTGGTTTTCTGGATAAACTTAAAATATTGAGTGCTTGTGGATGCAAAAAGCTTAGAAGTTTTCCACCCATCAAATTGACCTCTCTTGAAAAACTTGAACTTTCATATTGTTCTAGTCTTGAGAGCTTTCCAGAAATACTAGGAAAGATGGAAAACATAAGGGGAGTTTGGTTGCATGGTACTCCCATAAAAGAATTGCCATTTTCATTTCAAAATCTTATTGGACTCCAAGATTTATACCTGTTAGACTGTGAAATTGTTCAGTTACCGAGTAACATTATCATGATGCCAAAACTGACTCTTATCCACGCTTCGGGATGGAAAGGGTGGCAATGGCTAAAACAGGAAGAGGGTGGAGAAAAAGTGGGCTCAATAGTATATTCAAAGGTAGAATGTCTTTGTGCCCGAGAGTGCAACCTGTATGATGATTTTTTTTCAATAGATTTCACGTGGTTTGCTTGTGTGAAGAAATTATACCTATGGGACAATTATTTCACAATCCTTCCTGAATGCATCAAAGAATGTCAATTTTTAAGGGAGCTGGAGGTGAGCAATTGCAAGCATCTTCGGGAAATTAGAGGGATTCCACCAAACTTAAAACATTTCAATGCAACAAATTGTAAATCCTTGACTTCCTCGAGTACAAGCATGTTCCTAAATCAGGAACTGCATGAGGCTGGAAACACGCTGTTTTATTTGCCAGGAGTAAGGATTCCGGAGTGGTTCGACCACCAAAGCAGGGGACGTTCAATTTCTTTCTGGTTTCGTAATAAGTTCCCTGACAAAGTTCTTTGTCTTGTTATTGCACCTATGGATATTGACTCTGGATGGTTTAGTCCAAGGGTGTTCATCAATGGCAATAAATGTTCAGTTGATAGCCTCAATTTTTTGATGGGAAAGGATCATACATATCTTTTTGATCTACGAAAGATAGAATTAAAAAATCTGTATGAGGGACCTTTTGAAAATGAATGGAACCATGCAGAGATTACATGTGAGGGTTGGAGTTGGAAACAGACCTCAATCCCTAAAGAAATTGGAATCCACATATTCAAACAGGAAAGTAGCATGGAGGATATTAGATTCAGCAGTTTGGGATCACAAAACCACCAGTTGCTAAAAAGGCATAGGTTTGTGGACATGGAAGTTTTGTAG 3201 0.3827 MAVRSCSGAFTYDVFLSFRGEDTRHGFTGNLYKHLFDRGIHTFIDDEELQRGEQITPSLLKAIQESRIIIPVLSINYASSSFCLDELANILHCAERKGNLVLPVFYKVDPSDVRHQKGSYGEALAKHEERFKAKKENYNHNMENLEKWKVALHQVSNLCGYHFKHGDGYEYEFIGRIVEWVSSKIDRAPLHVADYPVGLESQVLKVKRLLDVGSDDGIHMIGIHGIGGIGKSTLARAVYNSLADDFDGSCFLENVREKSNKHGLQHLQSVLLSGILGEKETNIASLEQGTSMIQHRLQRKKVLLVLDDVDKHKQLQAIVGRPDWFGHGSRVIITTRDKQLLASYEVKRTYKVKKLNKNDALQLLKWKAFKKEKVDPSFVEVLNYVVTYASGLPLALEVIGSNLFGKSIEEWKSALKKYKRIPNKQILKILKVSFDALEEEEKSVFLDIACCFKGYEMTEVEDILCAHYGDCMKYHIGLLVENSLVKLRYGKVTLHDLIENMGKEIVRQKSPKEQGKRSRLWLPEDIIQVLEDNSGTRETEIICLDFPVFEKEEIVEWNRKAFKKMKNLKTLIIKNVHFSKGPKYLPNSLRVLEWWRYPSHCLPSDFHPKKLAICKLPNSCFTSLEWTGLLKACLMSTKFVNLRVLKFDDCICLTQIPDVSGLPNLEKFSFKYCENLVAVHDSTGFLDKLKILSACGCKKLRSFPPIKLTSLEKLELSYCSSLESFPEILGKMENIRGVWLHGTPIKELPFSFQNLIGLQDLYLLDCEIVQLPSNIIMMPKLTLIHASGWKGWQWLKQEEGGEKVGSIVYSKVECLCARECNLYDDFFSIDFTWFACVKKLYLWDNYFTILPECIKECQFLRELEVSNCKHLREIRGIPPNLKHFNATNCKSLTSSSTSMFLNQELHEAGNTLFYLPGVRIPEWFDHQSRGRSISFWFRNKFPDKVLCLVIAPMDIDSGWFSPRVFINGNKCSVDSLNFLMGKDHTYLFDLRKIELKNLYEGPFENEWNHAEITCEGWSWKQTSIPKEIGIHIFKQESSMEDIRFSSLGSQNHQLLKRHRFVDMEVL 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02154 1066 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 161 IPR035897 -
Pumo2g02154 1066 SMART till_3 11 158 IPR000157 GO:0007165
Pumo2g02154 1066 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 187 - -
Pumo2g02154 1066 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 448 IPR027417 -
Pumo2g02154 1066 Gene3D - 354 438 IPR042197 -
Pumo2g02154 1066 Pfam TIR domain 12 153 IPR000157 GO:0007165
Pumo2g02154 1066 SUPERFAMILY L domain-like 553 912 - -
Pumo2g02154 1066 Gene3D Ribonuclease Inhibitor 731 917 IPR032675 -
Pumo2g02154 1066 PRINTS Disease resistance protein signature 706 722 - -
Pumo2g02154 1066 PRINTS Disease resistance protein signature 220 235 - -
Pumo2g02154 1066 PRINTS Disease resistance protein signature 296 310 - -
Pumo2g02154 1066 PRINTS Disease resistance protein signature 389 403 - -
Pumo2g02154 1066 ProSiteProfiles TIR domain profile. 10 185 IPR000157 GO:0007165
Pumo2g02154 1066 Pfam NB-ARC domain 201 424 IPR002182 GO:0043531
Pumo2g02154 1066 Gene3D - 9 185 IPR035897 -
Pumo2g02154 1066 Gene3D - 186 349 IPR027417 -
Pumo2g02154 1066 Gene3D Ribonuclease Inhibitor 549 730 IPR032675 -
Pumo2g02154 1066 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 891 IPR044974 GO:0006952
Pumo2g02154 1066 SUPERFAMILY "Winged helix" DNA-binding domain 425 531 IPR036390 -
Pumo2g02154 1066 Pfam C-JID domain 915 1031 IPR045344 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02154 Pumo-Chr2 44727582 44731274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02154 7 788 WRKY Transcription Factor Family AT4G12020 29.925 2.50e-79 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02154 - - gmx:100780257 1538.86