Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02144 ATGACTTGTTTCCCATTCTCATTTCGTAAGAAAGCGCGTTTTGTGGCAACACATGATCCAGATATTGATGAAGAACTCTCAGGCATTCAAAATGTAAGAATCTTTACCTACAAAGAACTAAAAGTTGCGTCTGACAATTTCAGTCCAGCAAATAAAATTGGGCAGGGTGGATTTGGTTCGGTTTATAAGGGATTGCTAAAAGATGGGAAAGTAGCTGCTATAAAAGTACTTTCAGCAGAATCAAGTCAAGGGGTGAAGGAATTTATGACAGAGATTAATGTGATCTCAGAAATAGAGCATGAAAATTTGGTTAAGCTATATGGTTGTTGTGTGGAAGGGAATCAGCGAATTTTGGTCTACAATTATCTTGAGAACAATAGCCTTGCACAAACCCTTCTAGGTTCAGGTCACAGTAATATCATTTTTGATTGGAAAACACGATCTAGGATTTGCATTGGGATTGCACGTGGGCTTGCCTATCTTCATGAAGAAGTAAGACCACATATTGTTCACAGGGATATAAAAGCAAGCAATATTCTCCTTGACAAAAACCTTACACCCAAGATTTCAGATTTTGGTCTTGCAAAGCTTATTCCATCATACATGACTCATGTCAGCACTCGTGTGGCGGGAACAATAGGTTATTTGGCACCAGAGTATGCAATAAGGGGGACAGCTGACACGTAA 687 0.3916 MTCFPFSFRKKARFVATHDPDIDEELSGIQNVRIFTYKELKVASDNFSPANKIGQGGFGSVYKGLLKDGKVAAIKVLSAESSQGVKEFMTEINVISEIEHENLVKLYGCCVEGNQRILVYNYLENNSLAQTLLGSGHSNIIFDWKTRSRICIGIARGLAYLHEEVRPHIVHRDIKASNILLDKNLTPKISDFGLAKLIPSYMTHVSTRVAGTIGYLAPEYAIRGTADT 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02144 228 Gene3D Phosphorylase Kinase; domain 1 18 122 - -
Pumo2g02144 228 SUPERFAMILY Protein kinase-like (PK-like) 26 224 IPR011009 -
Pumo2g02144 228 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Pumo2g02144 228 FunFam Os07g0541700 protein 123 212 - -
Pumo2g02144 228 PIRSF ILK 22 228 - -
Pumo2g02144 228 FunFam cold-responsive protein kinase 1 18 122 - -
Pumo2g02144 228 SMART serkin_6 47 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g02144 228 Gene3D Transferase(Phosphotransferase) domain 1 123 228 - -
Pumo2g02144 228 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 225 - -
Pumo2g02144 228 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Pumo2g02144 228 ProSiteProfiles Protein kinase domain profile. 47 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g02144 228 Pfam Protein kinase domain 50 220 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02144 Pumo-Chr2 44377974 44380040 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02144 14 224 Receptor kinase-like Gene Family AT1G53430 59.906 9.78e-84 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo2g02144 Pkinase 6.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02144 - - gmx:100797706 435.647