Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02141 ATGTTGCTGGAGAAATCATTTACAAAACGTAGTGCTGAGAGTCCTGGTGCTAATGGAAGCCTTCATGAGGAAACTAAAAGGTCAAAACATTATTTTCAGTCAAAGACATTCATTGTGGAGATAAGTTTTGCTACTAAAATACCCCTACAGTCCATTGCTATTGCCCTCAAAGAGGATGAGTTGGATGCCAATTCTCAAGATGCTTTGAGAGTGCTTGATACTGTACTGAGGCAGAGTGCAGCTAACTGTGGGTGTCTCTTGGTAAGGCAATCTTTTTTTCATGATGACTCAAGAAATTTCACCGATGTTGGGGCTGGTGTAACAGCAGTCTCGGGTTTTCATTCCAGTTTTCGTCCCACACAGCAAGGATTGTCTCTCAATATGGACGTGTCAACAACGATGATCATAAAACCTGGATCTGTAATTGATTTTCTGTTATCAAATCAGCAAGTGAAGGAACCCCGTTATATTGACTGGGAAAAGGCCAAAAAAATGCTTAAAAATTTAAGGGTGCAAGCAACTAATCGTAACCAGGAATTTAAAATTTCTGGGTTGAGTGAGAAACCATGCATTCAGCAACTTTTTAGTATGAAGGTTAAAAATGATAACGACAATAGCGGAGGGCAGACAGTGGATATCACTGTATATGAATATTTTGCCAAACACTGTGGCATAGAGCTGACCTCATCTGCTTATCTTCCATGTCTTGATGTTGGGAAACCAAAACGGCCCATCTATCTTCCCTTGGAGCTATGTTCACTTGTTTCCCTCCAACGGTATACAAAGGTATTAGCTCCGATGCAAAGAGCATCTTTAGTTGAAAAATCACGCCAAAAGCCTGAAGATAGAATCAAAATTCTGAAAAATGCTGTAGGAAATTATTGCTACAATGATGATCCTGTTCTTGCTGCATGTGGCATTTCTATTGAGAAACAATTGACTCCGGTTGAAGGTCGTGTTCTTGAGACACCAAAGTTGAAGGTTGGTAAGAATGATGATTGCATCCCCCATAATGGAAGGTGGAATTTTAATAAGAAGACACTTCTACAACCATCACATATTGATTATTGGGCTGTTGTCAACTTTTCTGCAAGTTGTGATACTAGTTACATATCAAGGGAGCTGATCAGATGTGGAATGAGCAAGGGCATTAACATTGAACGACCATATACTTTGATAGAGGAGGAACCACAGTTGAGAAAATCTAACCCTGTTGCAAGGGTTGAAAGAATGTTTGACCTGCTTGCATCAAAACTAAATAGAGAACCAACGTTGATTCTCTGTGTCTTGCCAGAAAGGAAAAATTGTGACATATATGGGCCATGGAAAAAGAAGTGTCTGAGTGAAATTGGTGTTGTCACACAGTGCATTTCCCCGGTCAAGATCACTGATCAATACCTTACCAATGTACTTCTTAAAATCAATTCTAAGCTTGGAGGAATAAATTCTCTGTTGGCAATAGAGCATTCTGGGCATCTTCCCCTGATTAAAGATACCCCAACAATGATTTTGGGGATGGATGTCTCTCACAGTTCGCTTGGTCGATTAGATAGTCCATCAATAGCAGCTGTTGTTGGATCTCGACGTTGGCCACTGATTTCAAGGTATAGAGCATCTGTGAGAATGCAGGCATCCAAGGTGGAGATGATTGATGCTCTATATAATCCATTGGAAAATGGGAGTGATGATGGTATTATCAGAGAATTGCTTTTAGATTTCTATGAATCAAGTAATGGACGCAAGCCAACTCAATTTATTGTCTTCAGGGATGGAGTTAGTGAATCACAATTTAAACAAGTTTTGACTATCGAGCTTAACCAGATAATCAAGGCCTATCAACATCTTGGTGAGGTTAATGTTCCCAAGTTCACTCTGATTGTGGCACAGAAAAATCATCATACTAAGCTGTTTCTGCCTAAGGGTCCAGAAAATGTTCCTCCTGGGACAGTAGTGGACACAACAATCACACATCCAAGAAATTATGATTTTTACATGTGTGCTCATGCAGGGACGATTGGAACATCTAGGCCAGTACATTATCATGTGCTGCTTGATGAGATCGGTTTCTCGGCCGATGGCTTACAAAATTTGATCCATTCGCTGTCCTATGTGAATCAAAGGAGCACAATTGCAACCTCAGTTGTGGCACCCATATGCTATGCTCACCATGCTGCAGCTCAGATGGGGCAACTTTTGAATTTTGATGATTTATCAGTAACAGCTTCAAGTCCTGCTTCAGAGGGAAGCATCCCCATACCAGAGCTTCCAAGGTTGCATAAAAATGTCAGGAGTTCCATGTTCTTCTGTTGA 2310 0.4061 MLLEKSFTKRSAESPGANGSLHEETKRSKHYFQSKTFIVEISFATKIPLQSIAIALKEDELDANSQDALRVLDTVLRQSAANCGCLLVRQSFFHDDSRNFTDVGAGVTAVSGFHSSFRPTQQGLSLNMDVSTTMIIKPGSVIDFLLSNQQVKEPRYIDWEKAKKMLKNLRVQATNRNQEFKISGLSEKPCIQQLFSMKVKNDNDNSGGQTVDITVYEYFAKHCGIELTSSAYLPCLDVGKPKRPIYLPLELCSLVSLQRYTKVLAPMQRASLVEKSRQKPEDRIKILKNAVGNYCYNDDPVLAACGISIEKQLTPVEGRVLETPKLKVGKNDDCIPHNGRWNFNKKTLLQPSHIDYWAVVNFSASCDTSYISRELIRCGMSKGINIERPYTLIEEEPQLRKSNPVARVERMFDLLASKLNREPTLILCVLPERKNCDIYGPWKKKCLSEIGVVTQCISPVKITDQYLTNVLLKINSKLGGINSLLAIEHSGHLPLIKDTPTMILGMDVSHSSLGRLDSPSIAAVVGSRRWPLISRYRASVRMQASKVEMIDALYNPLENGSDDGIIRELLLDFYESSNGRKPTQFIVFRDGVSESQFKQVLTIELNQIIKAYQHLGEVNVPKFTLIVAQKNHHTKLFLPKGPENVPPGTVVDTTITHPRNYDFYMCAHAGTIGTSRPVHYHVLLDEIGFSADGLQNLIHSLSYVNQRSTIATSVVAPICYAHHAAAQMGQLLNFDDLSVTASSPASEGSIPIPELPRLHKNVRSSMFFC 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02141 769 FunFam Protein argonaute 7 133 260 - -
Pumo2g02141 769 Gene3D - 492 769 IPR036397 GO:0003676
Pumo2g02141 769 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 19 734 - -
Pumo2g02141 769 Pfam Piwi domain 425 732 IPR003165 GO:0003676
Pumo2g02141 769 Gene3D - 320 486 - -
Pumo2g02141 769 SMART DUF1785_2 86 138 IPR014811 -
Pumo2g02141 769 CDD PAZ_argonaute_like 138 255 - -
Pumo2g02141 769 SUPERFAMILY PAZ domain 133 296 IPR036085 GO:0005515
Pumo2g02141 769 FunFam Protein argonaute 3 493 769 - -
Pumo2g02141 769 Gene3D paz domain 132 260 - -
Pumo2g02141 769 Pfam PAZ domain 142 272 IPR003100 GO:0005515
Pumo2g02141 769 Pfam Argonaute linker 2 domain 285 327 IPR032472 -
Pumo2g02141 769 SMART PAZ_2_a_3 139 273 IPR003100 GO:0005515
Pumo2g02141 769 SUPERFAMILY Ribonuclease H-like 409 733 IPR012337 -
Pumo2g02141 769 ProSiteProfiles Piwi domain profile. 425 733 IPR003165 GO:0003676
Pumo2g02141 769 SMART Piwi_a_2 425 733 IPR003165 GO:0003676
Pumo2g02141 769 Pfam Argonaute linker 1 domain 88 137 IPR014811 -
Pumo2g02141 769 MobiDBLite consensus disorder prediction 1 25 - -
Pumo2g02141 769 CDD Piwi_ago-like 300 727 IPR045246 -
Pumo2g02141 769 ProSiteProfiles PAZ domain profile. 163 256 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02141 Pumo-Chr2 44272915 44366213 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02141 33 769 Eukaryotic Initiation Factors Gene Family AT5G43810 35.954 4.17e-143 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02141 K11593 - gmx:100778875 1428.69