LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo2g02139	ATGATGGCACGGTGCATATTGTCACATGGTTTGGCTTTTGCACTTGTTGCTGCGTTCTGTGTCTTCAGCTGCTTGGTTAACGTTGCACGAGCTCAATCTTCAAACGCCACCGCAACCACTGATCCTTCTGAAGCAAGAGCTTTAAATTCAATCTTCATCAAATGGCGTATATCGGCAGACACAAGTCTATGGAATATTAGCGGTGAATTGTGTAGTGGAAGAGCCTCCGACGATACCACCCCCATTGATGAGCCAACTATCAACCCATTCATCAAATGTGTTTGTTCCTACAACAATAGCACTACTTGCCGCATCACAGCACTGAAAGTTTATGCAATGGATGTGGTTGGTGAAATTCCAGAAGAGCTATGGACTCTCACTTACCTCACCAATATAAAAGTTGACCAGAATTACTTGACGGGTTCTCTACCTCCAGCCATTGGAAATCTAACTCGTATGGAATACTTGACTGTTGGCATCAATAATTTATCAGGGGAGCTTCCAAAGGAATTGGGAAATCTTATAGAATTAAAATCATTGAGTTTTTCGTCAAACAAGTTCTCAGGATCTCTCCCATCTGAACTTGGGAATTTGATAGAATTAGAACAACTCTACTTTGATAGTTCAGGAATTAGTGGTCCAATTCCTTCCACATTTGCAAACCTAAGGAATTTGGTGACAGTATGGGCTTCAGACATGGAACTCACAGGCAAAATACCAGACTTCATAGGGAATTGGTCTAAGCTTCAAACCTTGAGGTTCCAGGGCAATTCTTTTAATGGCTCAATACCTTCATCATTTTCCAATTTGACTTCTTTGACAGAATTGAGAATAAGTGGTTTATCTAATGGGAGCTCCTCACTGGAATTTGTAAAGAATATGAAATCTTTGACTATCTTAGAACTGAGGAATAACAATATTTCTGGTTCAATTCCATCCTTCGTTGGAGAGTTTCAAAATTTGACTCAACTGGATTTAAGCTTCAATAACATCACAGGACAAATTCTCGGATCAATTTTCAATTTGAGTTCGCTCAAATACTTGTTTATTGGAAATAACAAACTTAATGGCACACTGCCGATGCAGAAAAGTTCATCTCTTCAAAATATAGACTTGTCATACAATGATCTATCAGGTAGCCTCCCCTCCTGGGTAAACGAACCAAATGTACAACTGAATTTAGTTGCCAACAACTTGTCAATAGATGGCTCAGATACCAGTGGCTTGCCTATTGGGCTCAACTGTCTCCAAAAAAATTTTCCTTGCAATGCAGGTGCTGGAAGATATTCTGACTTTGCAATCAAGTGTGGCGGTCACCAAATTAGCTCAACAGAAGGAATTGTGTATGAAATGGACAATGAGACACTTGGCCCTGCTACATACTTTGTTACTGATTCAAATAGATGGGCAGTTAGTAATGTTGGATTATTTACAGGGAGTAATAATCCTGTATTCAAAAGTTTTGTGTCTAATCAGTTCACTGCCACTGTGAACCCGGAGCTCTTCCAAACAGCCCGACTCTCTGCTTCATCATTAAGATATTATGGCTTGGGGTTGGAAAATGGCTTTTACAACATCACCCTTCAATTTGCAGAAACAGCTATTCTGGATTCTACTACAACATGGAAAAGCCTTGGGAGGCGGGTCTTTGATATTTATATTCAGGGGACTCGTGTTTTGAAGGATTTTGACATACAAAAGGAAGCTGGGGGTGTCTCCTATAGAGCTGTCCAAAGGCAATTTAGGTTTGAAGTGACAAAAAACTATCTTGAGATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGCATACCAGCTCAAGGTACTTATGGGCCCTTGATTCAAGCCATCCATGCTATCCCAGATTTTGTGCCTACTGTCAGTAACAAACCTCCAAGTAGTAGCAACAATAAAACCGGTCTAATTGTTGGAATTGTTATCGGAGTTGGAGTTGGGACACTTAATGATGGAAGAGTTATTGCTGTGAAACAACTATCTATGGGATCACATCAAGGAAAGAGCCAGTTCATAACTGAGATTGCTACTATATCAGCTGTGCAACATCGTAATCTGGTCAAATTATATGGATGTTGCATTGAAGGGAGTAAAAGACTACTTGTCTATGAGTATCTAGAAAATAAAAGCCTTGATCAAGCATTATTTGGAAATTGTTTAACCCTTAATTGGTCCACTCGCTATGATATCTGCCTAGGTGTTGCTAGAGGTTTAACTTATTTACATGAAGAGTCACGTCTCCGTATTGTACACCGTGATGTGAAGGCTAGTAATATTTTGCTTGATTATGAGCTTATCCCGAAAATATCTGATTTTGGTTTGGCCAAATTGTATGATGATAAAAAGACCCATATAAGCACTGGTGTGGCAGGGACAATTGGATATCTTGCACCGGAGTATGCCATGCGTGGACACCTTACAGAGAAAGCAGATGTATTTTCTTTTGGTGTTGTGGCTTTAGAGTTGGTTAGTGGGAGGCCAAATTCTGATTCAAGTTTAGAAGGAGAGAAGGTGTATCTTCTAGAATGGGCTTGGCAACTTCATGAAAATAGTCGCATAATTGATCTAGTGGATCCTAGACTTTCAGAATTCAACGAGGAAGAAGTAAAACGCATTGTAGGAATATCACTATTGTGCACTCAGACATCACCGACATTACGACCATCAATGTCACGTGTGGTGGCAATGCTTTCAGGAGATATTGAAGTGAGCACTGTAACTACAAAGCCTGGATACTTGGCTGACTGGAAATTTGAGGATGTGAGCAGTTTTATGACTGGCATTGCAATCAAAGGATCAGATACAAGTTACCAGAATTCATCAGGAACTACTAGCATGGTGGGTGGTGCAAACTATTCACCAATAGATGTTTCTAAATCGATCCTTAATGAGACTCTTAGTGAAGGTAGGTAA	2928	0.4013	MMARCILSHGLAFALVAAFCVFSCLVNVARAQSSNATATTDPSEARALNSIFIKWRISADTSLWNISGELCSGRASDDTTPIDEPTINPFIKCVCSYNNSTTCRITALKVYAMDVVGEIPEELWTLTYLTNIKVDQNYLTGSLPPAIGNLTRMEYLTVGINNLSGELPKELGNLIELKSLSFSSNKFSGSLPSELGNLIELEQLYFDSSGISGPIPSTFANLRNLVTVWASDMELTGKIPDFIGNWSKLQTLRFQGNSFNGSIPSSFSNLTSLTELRISGLSNGSSSLEFVKNMKSLTILELRNNNISGSIPSFVGEFQNLTQLDLSFNNITGQILGSIFNLSSLKYLFIGNNKLNGTLPMQKSSSLQNIDLSYNDLSGSLPSWVNEPNVQLNLVANNLSIDGSDTSGLPIGLNCLQKNFPCNAGAGRYSDFAIKCGGHQISSTEGIVYEMDNETLGPATYFVTDSNRWAVSNVGLFTGSNNPVFKSFVSNQFTATVNPELFQTARLSASSLRYYGLGLENGFYNITLQFAETAILDSTTTWKSLGRRVFDIYIQGTRVLKDFDIQKEAGGVSYRAVQRQFRFEVTKNYLEIHLFWAGKGTCCIPAQGTYGPLIQAIHAIPDFVPTVSNKPPSSSNNKTGLIVGIVIGVGVGTLNDGRVIAVKQLSMGSHQGKSQFITEIATISAVQHRNLVKLYGCCIEGSKRLLVYEYLENKSLDQALFGNCLTLNWSTRYDICLGVARGLTYLHEESRLRIVHRDVKASNILLDYELIPKISDFGLAKLYDDKKTHISTGVAGTIGYLAPEYAMRGHLTEKADVFSFGVVALELVSGRPNSDSSLEGEKVYLLEWAWQLHENSRIIDLVDPRLSEFNEEEVKRIVGISLLCTQTSPTLRPSMSRVVAMLSGDIEVSTVTTKPGYLADWKFEDVSSFMTGIAIKGSDTSYQNSSGTTSMVGGANYSPIDVSKSILNETLSEGR	975

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo2g02139	975	ProSiteProfiles	Protein kinase domain profile.	599	908	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo2g02139	975	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	21	931	-	-
	Pumo2g02139	975	Pfam	Leucine Rich repeats (2 copies)	295	332	IPR025875	-
	Pumo2g02139	975	SUPERFAMILY	L domain-like	87	403	-	-
	Pumo2g02139	975	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	711	914	-	-
	Pumo2g02139	975	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	754	766	IPR008271	GO:0004672\|GO:0006468
	Pumo2g02139	975	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	284	407	-	-
	Pumo2g02139	975	Gene3D	-	431	621	-	-
	Pumo2g02139	975	Gene3D	Phosphorylase Kinase; domain 1	634	710	-	-
	Pumo2g02139	975	Pfam	Protein tyrosine and serine/threonine kinase	657	902	IPR001245	GO:0004672\|GO:0006468
	Pumo2g02139	975	CDD	STKc_IRAK	653	902	-	-
	Pumo2g02139	975	Gene3D	Transferase(Phosphotransferase) domain 1	711	914	-	-
	Pumo2g02139	975	FunFam	Leucine-rich repeat receptor-like protein kinase	429	621	-	-
	Pumo2g02139	975	SUPERFAMILY	Protein kinase-like (PK-like)	653	920	IPR011009	-
	Pumo2g02139	975	Gene3D	Ribonuclease Inhibitor	202	411	IPR032675	-
	Pumo2g02139	975	Gene3D	Ribonuclease Inhibitor	98	201	IPR032675	-
	Pumo2g02139	975	FunFam	Leucine-rich repeat transmembrane protein kinase	42	283	-	-
	Pumo2g02139	975	SMART	serkin_6	641	902	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo2g02139	975	Pfam	Malectin domain	431	617	IPR021720	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo2g02139	Pumo-Chr2	44226553	44244351	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo2g02139	153	975	Receptor kinase-like Gene Family	AT1G56120	57.576	0.0	1005

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pumo2g02139		PK_Tyr_Ser-Thr	2.8e-41	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo2g02139	-		-	jre:108998011	1291.56