Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02132 ATGGTGCAAACAAGGAAGTTCAGAGGTGTCAGGCAGCGCCATTGGGGTTCATGGGTTTCGGAAATTCGCCACCCACTTCTCAAGAGGAGGGTGTGGCTAGGCACGTTCGAGACAGCAGAAGAAGCTGCACGAGCTTACGACCAAGCAGCCATATTGATGAGCGGTAGAAACGCCAAAACCAATTTCCCAATAGTCCAAACCCCCGAGGGTGACCCGAAGACGCTAACACCCACCGACGAGACCACACCATCATCGACCACCTCGAAGGAGCTCGAAGAGATTCTCCACGCGAAGCTTCGGAAGTGCGGGAAGCTTCCGTCCCCTTCCATGACCTGCCTGAGGCTCGACCCAGAGAATTCGCACATCGGCGTGTGGCAGAAGCGTGCAGGGCAGCGTTCCGACTCCAACTGGGTCATGATGGTTCCGTTCGGAAAAAAGGGTGGTGCTAATGAAGCAGGTGGAGAAACTGGAGATGGTTCTGTGCCTAGTTGTTCCTCTTCGTTCTCTGAGTGCGATCAGACCCAGCAAGCCGCGAGGCAGGAGCTTGTGAGGACGGAGATGGACGAGGAAGAGAGAATTGCGCTGCAGATGATAGAAGAACTCCTCAGCAGGAACTGCCCCACCAGCCCTTCGTTTAATAACATATATTAA 651 0.5438 MVQTRKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPIVQTPEGDPKTLTPTDETTPSSTTSKELEEILHAKLRKCGKLPSPSMTCLRLDPENSHIGVWQKRAGQRSDSNWVMMVPFGKKGGANEAGGETGDGSVPSCSSSFSECDQTQQAARQELVRTEMDEEERIALQMIEELLSRNCPTSPSFNNIY 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02132 216 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Pumo2g02132 216 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Pumo2g02132 216 CDD AP2 6 65 IPR001471 GO:0003700|GO:0006355
Pumo2g02132 216 MobiDBLite consensus disorder prediction 62 89 - -
Pumo2g02132 216 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Pumo2g02132 216 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Pumo2g02132 216 MobiDBLite consensus disorder prediction 71 89 - -
Pumo2g02132 216 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Pumo2g02132 216 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Pumo2g02132 216 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Pumo2g02132 216 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Pumo2g02132 216 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02132 Pumo-Chr2 43900487 43902967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02132 1 205 AP2-EREBP Transcription Factor Family AT1G15360 58.654 1.69e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pumo2g02132 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02132 - - gmx:100779921 345.895