Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02120 ATGTCAAGCTGCGGCATCAACGTTGCCCCTGAGCAACTCTGCTACATCCCCTGCAACTTTTGCCACATTGTTCTTGCGGTGAGTGTTCCATGCAGTAACCTGTTTGACATCGTGACCGTTCGATGCGGGCACTGCACCAATCTGTGGACCGTGAACATGGCCGCAGCGTTTCAGTCACAGTCATGGCAAGATGCTCAGCCATCTGGTTACTCCAATCCGGAGTACAGAATTGACACAGGCTCCAAATGCAACAAGATACAAATGCGTGCACCCACCACTCATGTAACTGAGGAAAGGGTTGTGAACCGCCCTCCTGAGAAGAGGCAGCGCGTACCTTCTGCTTATAATCAGTTCATCAAGGAAGAGATTCAAAGGATCAAGGCCAATAATCCTGATATCAGTCACAGGGAAGCTTTCAGTACAGCTGCGAAAAACTGGGCACATTTCCCTCATATTCATTTTGGGCTGATGTTAGAAAGCAACAATCAAGCTTAG 495 0.4869 MSSCGINVAPEQLCYIPCNFCHIVLAVSVPCSNLFDIVTVRCGHCTNLWTVNMAAAFQSQSWQDAQPSGYSNPEYRIDTGSKCNKIQMRAPTTHVTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNNQA 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02120 164 CDD HMG-box_SF 110 146 - -
Pumo2g02120 164 PANTHER PROTEIN YABBY 6-RELATED 1 163 IPR006780 GO:0007275
Pumo2g02120 164 SUPERFAMILY HMG-box 100 149 IPR036910 -
Pumo2g02120 164 Pfam YABBY protein 9 156 IPR006780 GO:0007275
Pumo2g02120 164 Gene3D High mobility group box domain 94 151 IPR036910 -
Pumo2g02120 164 FunFam axial regulator YABBY 5-like 94 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02120 Pumo-Chr2 43429847 43435422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02120 8 164 C2C2-YABBY Transcription Factor Family AT2G26580 77.070 5.73e-87 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Pumo2g02120 YABBY 2.8e-65 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02120 K25796 - gmx:100804731 313.153