Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02116 ATGGCTTCCAAACCTCGCACCGTTGAAGAGATCTTCATGGACTTCAGCACCCGAAGAATCGCTATTATTCGTGCTCTCACTCACGGTAAGGATAATTTGTACCTCTATGGACATCCAAATAAAGCCTGGGAAGTAACTCTGCCAACAGAGGAAGTTCCACCAGAGCTTCCTGAGCCAGCTCTTGGAATCAATTTTGCTAGGGATGATGTGAGCCACAGGGACTGGCTTTCTTTGGTTGCTGTGCATAGTGATTCGTGGCTGCTTTCCGTGGCCTTTTACCTTGGAACTCATCTTAACCACAATGAAAGGAAACGTTTATTTGGTTTGATCAATGCTCTTCCCCCCATTTTTCAAGTTGTGACTGACAATAAACCAATCAAGTTCACCATGGATAATGGAAGCAAATTCAGGGGAAGCACCAAGGTTAGTGTTGTTCCACCAGTTGGAAATGAACATATTCAAATAGTTTGTGGATGTTGTGCTGGAAATTACAATAAAGATGAATTTTGGATCGGCTGTGATATTTGTGATTGGTGGTACCATGGGAAATGTATTATGATGTCGCCTGCAAAGGCTGAGACCCTAAAGCACTATAAATGTCCATCCTGCAGCTTGAGGTGA 621 0.4348 MASKPRTVEEIFMDFSTRRIAIIRALTHGKDNLYLYGHPNKAWEVTLPTEEVPPELPEPALGINFARDDVSHRDWLSLVAVHSDSWLLSVAFYLGTHLNHNERKRLFGLINALPPIFQVVTDNKPIKFTMDNGSKFRGSTKVSVVPPVGNEHIQIVCGCCAGNYNKDEFWIGCDICDWWYHGKCIMMSPAKAETLKHYKCPSCSLR 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02116 206 CDD PHD_AL_plant 157 206 IPR044104 -
Pumo2g02116 206 PANTHER CPG BINDING PROTEIN 4 204 IPR045104 GO:0006355|GO:0042393
Pumo2g02116 206 SMART PHD_3 156 204 IPR001965 -
Pumo2g02116 206 FunFam PHD finger alfin-like protein 149 205 - -
Pumo2g02116 206 ProSitePatterns Zinc finger PHD-type signature. 157 203 IPR019786 -
Pumo2g02116 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 204 IPR013083 -
Pumo2g02116 206 ProSiteProfiles Zinc finger PHD-type profile. 154 206 IPR019787 -
Pumo2g02116 206 SUPERFAMILY FYVE/PHD zinc finger 152 205 IPR011011 -
Pumo2g02116 206 Pfam Alfin 7 121 IPR021998 GO:0006355|GO:0042393
Pumo2g02116 206 Pfam PHD-finger 157 204 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02116 Pumo-Chr2 43221824 43223773 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02116 2 203 Alfin-like Transcription Factor Family AT5G05610 56.957 3.33e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pumo2g02116 Alfin 1.6e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02116 K26274 - gmx:100784077 341.658