Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02087 ATGGAATTGAAAAAGGGCAAGCTTGTCAGGTTCTACACGGATGGCAAAAAGCATAAAAAATCACTATGGGGAGCAACTGAGCCTCCAGCGCTTAAACCTAGCAGCAATTTGTTACCATTAGGGAAAAATAGAATTGCTGAAACATTTAGAATTGGAGGATCGAAGGTGTTCCCGGAGGACCACGAGCCGTGGCGTAAAAGAATACTTGACCCGGGTAGCGAGATTGTGTTGAAATGGAACCGGGTCTTCATAGTTTCATGCTTGGTGGCTCTTTTTGTTGATCCATTGTACTTTTATTTGCCTAGTGTGATAGAAAATAAAGGGTCTTCATGTGTAAGGACAGACCTAACATTGCGCATTGTTGTGACCTTTCTTCGCACTATTGCGGACCTTTTTTATCTGTTGCACCTGATAATTAAGTTTAGAACAGCATATGTGGCACCAAGTTCACGGGTATTTGGCAGGGGTGAACTTGTCATGGACCCGAAGAAGATTGCAAGGAGATATATCAGATCTGATTTCTGCATTGATTTTATTGCCACACTCCCTCTACCTCAGATGGTCATTTGGTTTATTATACCAGCAACAAGAAGCCCTCAAACTGATCACAAGAATAATGCGCTTGCATTGATTGTTTTGCTTCAATATGTTCCAAGATTATATTTGATTTTTCCATTAAGTTCTCAAATAATCAAAGCAACAGGAGTGGTTACGAAGACTGCTTGGGCAGGAGCTGCATATAATTTGCTGTTGTATATGTTAGCTAGCCATGTTTTAGGGGCTGCTTGGTATCTTCTATCCGTGGACCGATACACTACTTGTTGGAAATCCTTTTGCAAAAAGGAACCTAATCCTGAAAGTTGCTTTCTTTACCTAGACTGCAGTTCTTTGAATATTAAGCTGCGCGAGATATGGGCAAATAGTACAAATGTGTTTAGCAGCTGTGATCCCAGTAATGATGATATTAATTTCAAGTATGGAATATTTGAAAATGCAGTAAAGAAACATGTTGTCTCTTCAAACTTTATCCCAAAATACCTTTATTGTTTATGGTGGGGATTGCAGCAATTAAGTTCTTATGGGCAGAACCTAGAAACTAGCACGTTTATTGGAGAAACATCATTTGCTATTGTCATTGCCATCTTGGGTCTTGTATTATTTTCTCATTTGATTGGGAACATGCAGACATATTTGCAATCAATTACTATAAGGCTTGAGGAGTGGAGGCTTAAGCGAAGAGACACAGAGGAGTGGATGAGGCATCGCCAACTCCCTGAAGATTTGAGAAGTCGTGTCAGACGATTTGTTCAATATAAATGGCTTGCTACTCGTGGAGTTGATGAGGAAACCATTCTACGTGCATTACCTGCTGATCTTCGCCGTGATATCCAACGCCATTTGTGCTTAGACCTTGTTAGAAGAGTTCCCTTCTTCTCACAGATGGATGATCAGCTTCTGGATGCAATATGTGAGCGGCTGGTGTCGTCTCTGAGCACTCAAGGCACCTACATTGTTCGTGAGGGTGACCCTGTGACTGAAATGCTTTTTATCATTAGAGGTAGACTGGATAGTTCTACTACAAATGGCGGCCGTACTGGTTTCTTCAACTCAATCATATTGAGACCGGGAGATTTTTGTGGGGAGGAACTACTTTCTTGGGCTTTACTCCCAAAATCAACCATTAATTTGCCCTCTTCTACTAGGACAGTTAAAGCCCTAAGTGAGGTTGAAGCTTTTGCTCTTCGGGCCGAAGACCTCAAGTTTGTTGCTAATCAATTTAGGCGCCTTCACAGTAAGAAGCTGCAGCACACTTTTCGATTTTATTCCCACCATTGGAGGACTTGGGCAGCCTGCTTTATACAGGCTGCTTGGCGCCGATATAAGAAAAGGATGACTATGAAAGACCTCAGTTTGAGGGAGGAATCCATTCCTTTAGACGAGACAGTAGCTAGTGAGAGAGAACATGAGGACTATTCTGCTGGTTCAAATTCAACTCAAGCTAAATTGAACCTTGGGGCTACAATTCTTGCTTCAAGATTTGCCGCCAACACCCGAAGGGGAGCTCTGAAGATTAAAGATGACATGCCCCAGTTACAGAAGCCTGAAGAACCTGACTTTTCCACCGAAGCCGATGATGATTAG 2142 0.4211 MELKKGKLVRFYTDGKKHKKSLWGATEPPALKPSSNLLPLGKNRIAETFRIGGSKVFPEDHEPWRKRILDPGSEIVLKWNRVFIVSCLVALFVDPLYFYLPSVIENKGSSCVRTDLTLRIVVTFLRTIADLFYLLHLIIKFRTAYVAPSSRVFGRGELVMDPKKIARRYIRSDFCIDFIATLPLPQMVIWFIIPATRSPQTDHKNNALALIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGAAWYLLSVDRYTTCWKSFCKKEPNPESCFLYLDCSSLNIKLREIWANSTNVFSSCDPSNDDINFKYGIFENAVKKHVVSSNFIPKYLYCLWWGLQQLSSYGQNLETSTFIGETSFAIVIAILGLVLFSHLIGNMQTYLQSITIRLEEWRLKRRDTEEWMRHRQLPEDLRSRVRRFVQYKWLATRGVDEETILRALPADLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGRLDSSTTNGGRTGFFNSIILRPGDFCGEELLSWALLPKSTINLPSSTRTVKALSEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKKRMTMKDLSLREESIPLDETVASEREHEDYSAGSNSTQAKLNLGATILASRFAANTRRGALKIKDDMPQLQKPEEPDFSTEADDD 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02087 713 Gene3D Jelly Rolls 475 595 IPR014710 -
Pumo2g02087 713 FunFam Cyclic nucleotide-gated ion channel 1 404 468 - -
Pumo2g02087 713 ProSiteProfiles IQ motif profile. 613 642 IPR000048 GO:0005515
Pumo2g02087 713 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 60 706 - -
Pumo2g02087 713 SUPERFAMILY cAMP-binding domain-like 407 599 IPR018490 -
Pumo2g02087 713 Gene3D - 82 402 - -
Pumo2g02087 713 MobiDBLite consensus disorder prediction 691 713 - -
Pumo2g02087 713 PRINTS EAG/ELK/ERG potassium channel family signature 254 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo2g02087 713 PRINTS EAG/ELK/ERG potassium channel family signature 390 399 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo2g02087 713 PRINTS EAG/ELK/ERG potassium channel family signature 440 447 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo2g02087 713 PRINTS EAG/ELK/ERG potassium channel family signature 372 383 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo2g02087 713 PRINTS EAG/ELK/ERG potassium channel family signature 137 146 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo2g02087 713 Pfam Ion transport protein 79 403 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pumo2g02087 713 SMART cnmp_10 477 608 IPR000595 -
Pumo2g02087 713 FunFam Cyclic nucleotide-gated ion channel 1 475 593 - -
Pumo2g02087 713 ProSiteProfiles cAMP/cGMP binding motif profile. 477 607 IPR000595 -
Pumo2g02087 713 Pfam Cyclic nucleotide-binding domain 500 588 IPR000595 -
Pumo2g02087 713 SUPERFAMILY Voltage-gated potassium channels 73 399 - -
Pumo2g02087 713 CDD CAP_ED 477 608 IPR000595 -
Pumo2g02087 713 Gene3D Helix hairpin bin 405 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02087 Pumo-Chr2 41932209 41943718 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02087 1 712 Ion Channels AT4G30360 69.822 0.0 1023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02087 K05391 - gmx:100808425 1382.85