Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02078 ATGCATGCCATGATGGGTTTGCTTCCATTTTCAATGATTCTATTTCTCTTTATAACCATTGTTCATTCAGGAGTTTATGGGGAGGAAAACGTGACCCTAGTGAATGAAAAAGGATCACTTGTTTCATTCATGTTGGGCATTTTTTCTGACCCCAAAAACGTTCTAAAAAGTTGGAAGTCCCCTGGTGTACATGTTTGCAATTGGTATGGTGTCAGATGCAACAATGCAAGTGACAAGATCATAGAGCTTGCTCTTAATGGAAGCTCACTGGGGGGCACTATTTCCCCTGCTCTTGCTAACCTTTCTTACTTGCAAATTCTTGATCTTTCTGACAATTCTTTTATGGGTCACATTCCAAAAGAACTGGGCTATTTGGTTCAGCTTCAACAACTCAGTTTATCTGGGAATTTTCTTAAAGGGGAAATTCCCTCTGAGTTGGGTTCATTTCACAACTTGTACTACCTTAACATGGGAAGTAATCATCTTGAGGGTGATATTCCACCATCACTTTTTTGCAATGGGTCTTCCACATTGAGGTATATAGACCTCTCTAACAATTCCTTGGGAGGACAAATACCCTTGAGCAATGACTGTATCCTCAAAGAGCTTAGGTTCCTCTTACTTTGGTCTAACAAATTTGTAGGCCATGTTCCTCTAGCTCTTTCAAACTCCACAGAACTAAAATGGCTCGACGTGGAATCAAATAGGTTGAGTGGGGAGTTACCATCTGAAATTGTAAGTAATTTGCCACAACTACAATTCCTCTACCTATCATATAATGACTTTGTTAGCCATGATGCTAACACCAAACTTGAACCTTTCTTCTCTTCCTTGATGAATTTGTCTAACATGCAAGGCCTTGAATTGGCGGGAAACAATCTTGGAGGGAAGCTACCTCATAATATTGGTGATCTTCTTCCTACTAGCTTGTTTCAACTTCACCTAGAAGACAATCTCATATATGGTTCTATACCTCCAAACATTGCAAACCTTGTCAATCTGACTCTATTAAACTTTTCCAGCAACTTGCTAAATGGATCAATACCTCCCAGCCTCTGCCAGATGGGGAGGCTAGAGAGAATTTATTTGTCAAATAATTCACTATCTGGGGAGATTCCTTCAACCCTTGCTGGCATTAAGCATCTGGGGCTTCTTGACTTGTCAAGAAACAAGCTTTCTGGTTCAATACCAGACACTTTTGCTAACCTCACCCAGTTAAGAAGGCTTTTGCTTTATGACAACCAGCTTTCTGGAACCATCCCACCAAGTCTGGGAAAATGTGTCAATTTGGAGATTTTGGACCTATCCCACAACAAGATTTCAGGGCTGATCCCTAAGGAAGTTGCAGCCTTGACTAGCTTGAAACTCTACCTGAATTTATCAAGTAATAACTTAGATGGGCCTTTACCATTAGAGCTCTCCAAAATGGACATGGTGCTGGCCATTGACCTATCCATAAACAATCTCTCTGGCAGAATCCCACCACAGCTTGAAAGTTGCATAGCATTAGAGTACCTTAACCTTTCTGGTAACTCCTTAGAAGGCCATCTACCGGATTCATTAGGCAAGTTGCCTTATATCCAAGCACTTGATGTGTCTTCAAATCAATTGACAGGGTTAATACCACAGTCCCTTCAGTTGTCCACTCTCAAGAAAGTTAATTTCTCTTTCAACGAATTCTCAGGGAGTGTCTCAAACAAGGGAGCCTTTTCATCTTTGACCATAGATTCTTTCCTAGGAAATGATGGCCTCTGTGGCTCGGTAAAAGGCATGCAAAACTGCCACAAGAAACGAAGGTATCATTTGGTTCTCCTACTAATACCAGTGTTACTATTTGGCAGCCCCCTGCTGTGCATGCTGGGGTACCCCACAATAAAAAGGTCAAAAGAAAGAATGCAATTGGCGACACTTAGCAAAGGGGCTTTTGAGGATGAAGATGAGGAAACAAAGGAGCTCAAGTACCCAAGAATTTCGTATAGACAACTTATTGAGGCCACAGGAGGCTTTAGTGCTTCAAGCCTAATCGGTTCGGGTCGATTTGGACAGGTCTACAAAGGAGTTCTCCGTGATAACACAAGAATAGCAGTGAAGGTGTTAGACACAACAACAGCTAGTGAGATTTCAGGGAGCTTCAGAAGGGAATGCCAAATCTTGAAGAGGACTAGGCACAGAAATTTAATAAGGATCATCACAATTTGCATCAAAAAGGAGTTTAAGGCTCTTGTTCTTCCATTGATGCCAAATGGTAGTCTTGAGAGGCACTTATATCCGAGGCAGAGGTTGGATATGGTTCGGTTGGTGAGGATCTGCAGTGATGTAGCTGAGGGAATGGCCTATTTGCACCACTATTCTCCAGTTAGAGTGGTGCACTGTGATCTTAAGCCGAGCAATATACTACTTGATGACGATTTGACAGCTTTGGTATCTGATTTTGGTATTGCAAGGCTTGTAAAAGTTGACGACAACATGCCCACAAGTGACACATCTTTCAGTTCAACACATGGCTTGTTATGTGGCTCCGTTGGCTACATAGCTCCAGAGTATGGAATGGGAAAACATGCATCAACTCAAGGTGATGTTTACAGTTTCGGTGTACTTGTGCTAGAAATAGTGACAGGTAGACGCCCAACAGATGTCCTTGTTCATGAAGGGTCTTGCTTGCATGAGTGGGTTAAGAGACAATATCCACACGAGCTTGGTAACATTGTTGAACAAGCATTGCAAAGATGCTCTCCCTCTGGCATGCCTAGTCACTATCACAAAATTGGGCAAGATGTTATTTTGGAACTCATAGAGTTGGGGCTTCTGTGCACACACCACAATCCTTCAACAAGACCAAGCATGCTGGATGTAGCCCAAGAAATGGGGAGGTTGAAGGACTACCTTTCTCATATATCATCATCTTCTCTGCTCATTGAAGATAAATTTAGCCAGAAAATAAATAACTAA 2949 0.4191 MHAMMGLLPFSMILFLFITIVHSGVYGEENVTLVNEKGSLVSFMLGIFSDPKNVLKSWKSPGVHVCNWYGVRCNNASDKIIELALNGSSLGGTISPALANLSYLQILDLSDNSFMGHIPKELGYLVQLQQLSLSGNFLKGEIPSELGSFHNLYYLNMGSNHLEGDIPPSLFCNGSSTLRYIDLSNNSLGGQIPLSNDCILKELRFLLLWSNKFVGHVPLALSNSTELKWLDVESNRLSGELPSEIVSNLPQLQFLYLSYNDFVSHDANTKLEPFFSSLMNLSNMQGLELAGNNLGGKLPHNIGDLLPTSLFQLHLEDNLIYGSIPPNIANLVNLTLLNFSSNLLNGSIPPSLCQMGRLERIYLSNNSLSGEIPSTLAGIKHLGLLDLSRNKLSGSIPDTFANLTQLRRLLLYDNQLSGTIPPSLGKCVNLEILDLSHNKISGLIPKEVAALTSLKLYLNLSSNNLDGPLPLELSKMDMVLAIDLSINNLSGRIPPQLESCIALEYLNLSGNSLEGHLPDSLGKLPYIQALDVSSNQLTGLIPQSLQLSTLKKVNFSFNEFSGSVSNKGAFSSLTIDSFLGNDGLCGSVKGMQNCHKKRRYHLVLLLIPVLLFGSPLLCMLGYPTIKRSKERMQLATLSKGAFEDEDEETKELKYPRISYRQLIEATGGFSASSLIGSGRFGQVYKGVLRDNTRIAVKVLDTTTASEISGSFRRECQILKRTRHRNLIRIITICIKKEFKALVLPLMPNGSLERHLYPRQRLDMVRLVRICSDVAEGMAYLHHYSPVRVVHCDLKPSNILLDDDLTALVSDFGIARLVKVDDNMPTSDTSFSSTHGLLCGSVGYIAPEYGMGKHASTQGDVYSFGVLVLEIVTGRRPTDVLVHEGSCLHEWVKRQYPHELGNIVEQALQRCSPSGMPSHYHKIGQDVILELIELGLLCTHHNPSTRPSMLDVAQEMGRLKDYLSHISSSSLLIEDKFSQKINN 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02078 982 CDD STKc_IRAK 675 958 - -
Pumo2g02078 982 ProSitePatterns Serine/Threonine protein kinases active-site signature. 788 800 IPR008271 GO:0004672|GO:0006468
Pumo2g02078 982 ProSitePatterns Protein kinases ATP-binding region signature. 675 697 IPR017441 GO:0005524
Pumo2g02078 982 SMART LRR_typ_2 379 402 IPR003591 -
Pumo2g02078 982 SMART LRR_typ_2 403 427 IPR003591 -
Pumo2g02078 982 SMART LRR_typ_2 149 173 IPR003591 -
Pumo2g02078 982 SMART LRR_typ_2 331 355 IPR003591 -
Pumo2g02078 982 SMART LRR_typ_2 125 148 IPR003591 -
Pumo2g02078 982 SMART LRR_typ_2 249 277 IPR003591 -
Pumo2g02078 982 SMART LRR_typ_2 281 305 IPR003591 -
Pumo2g02078 982 SMART LRR_typ_2 524 547 IPR003591 -
Pumo2g02078 982 SMART LRR_typ_2 428 450 IPR003591 -
Pumo2g02078 982 SUPERFAMILY Protein kinase-like (PK-like) 650 953 IPR011009 -
Pumo2g02078 982 Gene3D Ribonuclease Inhibitor 177 597 IPR032675 -
Pumo2g02078 982 PANTHER RECEPTOR-LIKE PROTEIN 55 313 956 - -
Pumo2g02078 982 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 205 600 - -
Pumo2g02078 982 Pfam Leucine rich repeat 357 416 IPR001611 GO:0005515
Pumo2g02078 982 Gene3D Transferase(Phosphotransferase) domain 1 746 971 - -
Pumo2g02078 982 PRINTS Leucine-rich repeat signature 524 537 - -
Pumo2g02078 982 PRINTS Leucine-rich repeat signature 430 443 - -
Pumo2g02078 982 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 746 968 - -
Pumo2g02078 982 Pfam Leucine Rich Repeat 503 524 IPR001611 GO:0005515
Pumo2g02078 982 Pfam Leucine Rich Repeat 429 447 IPR001611 GO:0005515
Pumo2g02078 982 FunFam Leucine-rich repeat family protein 38 197 - -
Pumo2g02078 982 Gene3D Phosphorylase Kinase; domain 1 640 744 - -
Pumo2g02078 982 SUPERFAMILY L domain-like 330 586 - -
Pumo2g02078 982 ProSiteProfiles Leucine-rich repeat profile. 429 450 IPR001611 GO:0005515
Pumo2g02078 982 SMART serkin_6 669 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g02078 982 ProSiteProfiles Protein kinase domain profile. 669 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g02078 982 Pfam Protein kinase domain 671 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g02078 982 Pfam Leucine rich repeat N-terminal domain 37 74 IPR013210 -
Pumo2g02078 982 Gene3D Ribonuclease Inhibitor 33 176 IPR032675 -
Pumo2g02078 982 SUPERFAMILY L domain-like 44 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02078 Pumo-Chr2 41193572 41197137 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02078 8 955 Receptor kinase-like Gene Family AT5G20480 33.140 9.07e-155 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Pumo2g02078 Pkinase 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02078 - - gmx:100792446 1414.05