Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02073 ATGGGGCAATCTGGGTGGTCTGAAATAATTGTATGCATAGCCACTCTAGTGTTATGCAGCGGTTTTGCAACATGTTTTTCCACGGACCACCCATTGCTCCAACAACAAAAGGACCGGGTTGGTAGGCTCCCAGGTCAAACCTTCAACGTCAGCTTCGCACACTATGCTGGGTATATCACCGTCAATGAGAAAGCTGGCAGAACACTCTTCTACTGGTTCATCGAGGCACTTGAAGATCCTCATTCCAAGCCCCTTGTTTTGTGGCTCAGTGGAGGACCTGGATGTTCATCCATTGCTTTCGGACAGTCAGAAGAAGTTGGGCCTTTTCATATAAATTCAGATAGCAAGACCCTTCATCTCAATCCCTATTCTTGGAACCGAGATGCCAACATTCTTTTTCTTGACACTCCTGTTGGGGTTGGATTTTCATATTCAAACAATGAATCCGACCTGCTGATCAATGGCGATAAGAGGACAGCTGAGGACAATTTAGTATTTCTATTGAAGTGGTTTGAGCGTTTCCCTCAATATAAAAGAAGCGACTTTTTTATCAGTGGTGAGAGCTATGCAGGGCATTATGTTCCTCAACTTAGCCAAGCTATTGTAAAGTACAACTCGGCTACTAAAGAAAATGCTATAAATCTGAAAGGTTTCATGTTAGGAAATGCTCTAACAGATGATTTCCATGATCAATTGGGGATGTTCGAGTTTATGTGGTCAAGTGGTTTGATTTCAGATCAAACATACAAGCTTTTAAACCTACTATGTGATTTAGAGTCAGTTGAGCACCCGTCACATTCATGTGAAAAAATTTGGGAAATTGCTAATGAAGAACTTGGAAATATAGACCCATACAGTCTCTTTACTCCTCCGTGCCATGCTAATGTTAGCCAGTTAAGTCGGCTGGTGAGAAGAAAGCATAGAATTGGTAGACTCAGTGCAGAGTATGATCCATGCACTGAAAGGCACTCCATTGTATACTTCAATCGACCAGAGGTCCAAACAGTTCTTCATGTTGATCCAAATCATAAGCCTGCTACATGGGAGACCTGCAGTGAAGTGGTATTTACAAACTGGAAGGATTCTCCAAGAACAGTGCTCAATATTTATCATGAACTTATTCACATGGGATTGAGGATATGGGTGTTCAGTGGTAATACAGACGCGGTAATACCTGTGACATCTACTCGCTATAGCATAAATGCTCTCAAGCTTCCTACCGTGAGTCCTTGGCGTGCATGGTATGATGATGGGGAGGTGGGAGGATGGACCCAAGAATATGCTGGCCTTACGTTTGTGGTTGTAAGGGGTGCGGGGCACGAAGTTCCTTTGCATAGACCAAAACTTGCTCTCACACTTTTCAAAGCCTTCTTAGCAGGAACATCAATGCCCAACCTTGATGAGCCAGTCAGTGCCTCCTAA 1422 0.4346 MGQSGWSEIIVCIATLVLCSGFATCFSTDHPLLQQQKDRVGRLPGQTFNVSFAHYAGYITVNEKAGRTLFYWFIEALEDPHSKPLVLWLSGGPGCSSIAFGQSEEVGPFHINSDSKTLHLNPYSWNRDANILFLDTPVGVGFSYSNNESDLLINGDKRTAEDNLVFLLKWFERFPQYKRSDFFISGESYAGHYVPQLSQAIVKYNSATKENAINLKGFMLGNALTDDFHDQLGMFEFMWSSGLISDQTYKLLNLLCDLESVEHPSHSCEKIWEIANEELGNIDPYSLFTPPCHANVSQLSRLVRRKHRIGRLSAEYDPCTERHSIVYFNRPEVQTVLHVDPNHKPATWETCSEVVFTNWKDSPRTVLNIYHELIHMGLRIWVFSGNTDAVIPVTSTRYSINALKLPTVSPWRAWYDDGEVGGWTQEYAGLTFVVVRGAGHEVPLHRPKLALTLFKAFLAGTSMPNLDEPVSAS 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02073 473 ProSitePatterns Serine carboxypeptidases, histidine active site. 430 447 IPR033124 GO:0004185
Pumo2g02073 473 ProSitePatterns Serine carboxypeptidases, serine active site. 184 191 IPR018202 GO:0004185
Pumo2g02073 473 FunFam Carboxypeptidase 366 460 - -
Pumo2g02073 473 Pfam Serine carboxypeptidase 44 459 IPR001563 GO:0004185|GO:0006508
Pumo2g02073 473 SUPERFAMILY alpha/beta-Hydrolases 40 463 IPR029058 -
Pumo2g02073 473 Gene3D - 366 460 - -
Pumo2g02073 473 Gene3D alpha/beta hydrolase 34 294 IPR029058 -
Pumo2g02073 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 121 133 IPR001563 GO:0004185|GO:0006508
Pumo2g02073 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 134 144 IPR001563 GO:0004185|GO:0006508
Pumo2g02073 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 170 195 IPR001563 GO:0004185|GO:0006508
Pumo2g02073 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 430 443 IPR001563 GO:0004185|GO:0006508
Pumo2g02073 473 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 41 447 IPR001563 GO:0004185|GO:0006508
Pumo2g02073 473 Gene3D - 319 357 - -
Pumo2g02073 473 FunFam Carboxypeptidase 34 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02073 Pumo-Chr2 40920174 40925323 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02073 377 463 Calmodulin-binding Proteins AT2G22960 27.273 1.46e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02073 K16297 - gmx:100805227 864.759