LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo2g02068	ATGGAAGCTAGTACTGGACTCTTTGCTGGTACTCCAAACAGCAATGAGCTTGTGGTCATTCAAGGGCACGACGAGCCTAAGCCTGTGAAGAACTTAGATGGTCAGCTCTGTGAGATATGTGGTGATTCTGTGGGACTTACTGCGGATGGAGACTTATTTGTAGCTTGTGAAGAGTGTGGTTTCCCTGTTTGCAGGCCATGTTATGAGTATGAAAGAAGGGAAGGGACTCAAGTTTGTCCTCAGTGTCATACAAGATACAAGCGTATCAAAGGAAGCCCAAGAGTTTTGGGAGATGAGGAGGAAGATGATGTAGATGATATTGAACATGAATTCAAGCATGAAGAGATGCAGCAAGGGAACATGATCCATGGAGATGGTGATGGGAATTCTAAATCAAAGCCGGTAGGGTTAGCAAAGTTTAGATTATTTGTATGCAACATGCAGGTGAATGGGGAGCTGCCCATATCTTCTCACAGTGTTGGAGAACCTGGTGCAAAATTGGATGGCAAGGAGAAAACAGATGAGTGGATGTTGCATCAAGGCAATCTATGGCCTGAAACTGATGCCGCAGTTGATCCTGAAAAGGCCATGAAAGAGCCACTGTCAAGGAAAGTTGCAATACCATCAGGCAGACTCAGTCCTTACAGAATGATGGTTGTGGCTCGGCTCCTCCTTCTATTACTCTTCTTTCAGTACAGAATCTTCCACCCAGTACCTGATGCAATTGGACTATGGTTCATATCTGTGACATGTGAAATCTGGCTTGCAATATCCTGGATGATTGATCAGCTTCCCAAATGGTTCCCCATTGATCGCGAGACGTATCTTGATCGTCTTTCAATCAGGTTTGAACCAGAGAACAAGCCCAATATGCTTTCTCCAATAGATGTCATTGTAACTACTGTGGATCCAATCAAGGAACCTCCTCTAGTTACAGCCAACACTGTTCTTTCAATCTTGGCCCTGGATTACCCTGCTGACAAAATCTCATGCTACGTTTCTGATGATGGAGCTTCCATGCTCACCTTTGAAGCTCTTCAAGAAACTGCTGAGTTTTCCAGAAAGTGGGTACCTTTCTGCAAAAAATTCTCTGTAGAACCTAGAGCACCAGAAAAGTACTTCTCTGAGAAGATAGATTTTCTAAAGGATAAGCTTCAATCCAATTATGTAAAAGAACGCCGTACTATGAAGAGAGAATATGAAGAATTTAAGGTGAGGATAAATGCACTTGTGGCTAAATCCATGAGAGTTCCCCTGGAAGGGTGGACTATGAAAGATGAGACACCATGGCCAGGAAACAACCCCAAAGACCACCCTAGTATGATACAAGTCCTTCTTCCTCACAATGTAGGTAATGAACTTCCCTGTCTTGTCTACACATCTCGCGAGAAAAGGCCTGCATTTCAACACCACAGCAAAGCAGGCGCAATCAACACCTTGCTTCGTGTATCGGCAGTGTTAAGCAATGCTCCTTTTGTGCTCAACTTGGATTGCAATCATTATGTAAATAACAGCAAGGCGGTGCGAGAGGCCATGTGTTTCTTCATGGACATACAACTTGGGAATGGCATTGGCTTTGTACAGTTTCCACTAAGGTTTGACAGCCTCGATAGGAATGATCGTTATGCCAACAAAAATACTGTTTTATTTGATATTAACTTGAGGTGCCTAGATGGAATTCAGGGACCTGCTTATGTTGGTTCAGCATGTATCTTCAGAAGGAAAGCCTTAACTGGCTTTGATTCTCCAAAGGCTTCAAAACGCCAAAGCATGGTGCAAGTACACTCAAAACAGGATGAGAATGGAGAAGAAGCAAGCATAACAGCAGCAGCAGATGAAGACAAGGAGCTATTGAAGTCAGAGAAGAATGATGAAAATAAATTCGGGAAGTCCACACTTTTCATGAACTCTTCATTAACAGAAGAAGGTGGTGTTGATCCATCTTCCAGTCAGGAAGCCCTGCTTAAAGAAGCCATTCATGTCATGAGTTCTAGATATGAAGACAGAACTCTCTGGGGATATGAGGTGGGTTTGAGCTATGGATCTATAGCAGCAGATATGCTGACAAGTTTGAAGATGCATTGTCGTGGTTGGAGGTCTGTATACTGCATGCCAAAGAGAGATCCATTCAGGGGCACAGCTCCTATCAACCTCACAGATAGACTGAACCAGGTGCTGAGATGGGCTGTGGGATCACTTCAGATCCTATTCAGCAGCCATTGCCCACTTTTGTATGGCCTCAATGGAGGAAGACTCAAGGGACTCCAAAGGATTGCCTATATTAACAGCACTGTCTACCCCTTCAGCTCAATACCCCTCCTAATATATTGTATCATTCCTGCCATCTGCTTGCTCACTGATAAATTCATCACACCATCGGTAGGCACTTTTGCAAGTCTAATCTTCATTGCATTGTTCATCTCGATCTTTGCCTCGGCGATTCTTGAATTGAGATGGAGTGGAGTTAGCCTTGAGGAGTGGTGGAGAAGCCAGCAATTCTGGGTCATTGGCAGTGTGTCTGCAAACCTCTTTGCCGTTGTGCAAAGCATTATGGGAGCCCTGCCACTTGGTAGAGTCAACACAAACTTCAGCATTGTGTCAAAGGCACCAGCTGATGTCGAGTTTCGCGAACTCTACGCCATTCGATGGACTGCACTTCTAATACCTCCAACCACCATCATCATAATCAACCTCATTGGTATTGTGGCTGGCTTCACAGATGCCATAAACAGTGGTGAACATTCTTGGGGAGCATTACTTGGGAAACTCTTCTTTTCTTTGTGGGTTATTGTCCATTTGTACCCTTTCCTTAAAGGTCTAATGGGTAGGCAGAACAGAACACCAACCCTTATTGTCATATGGTCTGTGCTCTTGGCTTCTATCTTCTCCTTGGTTTGGGTGAGAGTTGACCCTTTTGTGTTGAAAACAAAGGGGCCTGATGCCAAGCAATGTGGAATCAGTTGCTGA	2967	0.4425	MEASTGLFAGTPNSNELVVIQGHDEPKPVKNLDGQLCEICGDSVGLTADGDLFVACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRIKGSPRVLGDEEEDDVDDIEHEFKHEEMQQGNMIHGDGDGNSKSKPVGLAKFRLFVCNMQVNGELPISSHSVGEPGAKLDGKEKTDEWMLHQGNLWPETDAAVDPEKAMKEPLSRKVAIPSGRLSPYRMMVVARLLLLLLFFQYRIFHPVPDAIGLWFISVTCEIWLAISWMIDQLPKWFPIDRETYLDRLSIRFEPENKPNMLSPIDVIVTTVDPIKEPPLVTANTVLSILALDYPADKISCYVSDDGASMLTFEALQETAEFSRKWVPFCKKFSVEPRAPEKYFSEKIDFLKDKLQSNYVKERRTMKREYEEFKVRINALVAKSMRVPLEGWTMKDETPWPGNNPKDHPSMIQVLLPHNVGNELPCLVYTSREKRPAFQHHSKAGAINTLLRVSAVLSNAPFVLNLDCNHYVNNSKAVREAMCFFMDIQLGNGIGFVQFPLRFDSLDRNDRYANKNTVLFDINLRCLDGIQGPAYVGSACIFRRKALTGFDSPKASKRQSMVQVHSKQDENGEEASITAAADEDKELLKSEKNDENKFGKSTLFMNSSLTEEGGVDPSSSQEALLKEAIHVMSSRYEDRTLWGYEVGLSYGSIAADMLTSLKMHCRGWRSVYCMPKRDPFRGTAPINLTDRLNQVLRWAVGSLQILFSSHCPLLYGLNGGRLKGLQRIAYINSTVYPFSSIPLLIYCIIPAICLLTDKFITPSVGTFASLIFIALFISIFASAILELRWSGVSLEEWWRSQQFWVIGSVSANLFAVVQSIMGALPLGRVNTNFSIVSKAPADVEFRELYAIRWTALLIPPTTIIIINLIGIVAGFTDAINSGEHSWGALLGKLFFSLWVIVHLYPFLKGLMGRQNRTPTLIVIWSVLLASIFSLVWVRVDPFVLKTKGPDAKQCGISC	988

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo2g02068	988	MobiDBLite	consensus disorder prediction	593	622	-	-
	Pumo2g02068	988	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	20	110	IPR013083	-
	Pumo2g02068	988	CDD	mRING-HC-C4C4_CesA	35	85	-	-
	Pumo2g02068	988	MobiDBLite	consensus disorder prediction	588	622	-	-
	Pumo2g02068	988	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	284	390	IPR029044	-
	Pumo2g02068	988	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	446	582	IPR029044	-
	Pumo2g02068	988	FunFam	Cellulose synthase	436	590	-	-
	Pumo2g02068	988	PANTHER	X-BOX TRANSCRIPTION FACTOR-RELATED	199	955	-	-
	Pumo2g02068	988	Pfam	Cellulose synthase	603	982	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Pumo2g02068	988	Pfam	Cellulose synthase	295	593	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Pumo2g02068	988	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	295	804	IPR029044	-
	Pumo2g02068	988	Pfam	Zinc-binding RING-finger	27	104	IPR027934	-
	Pumo2g02068	988	Coils	Coil	393	413	-	-
	Pumo2g02068	988	FunFam	Cellulose synthase	19	110	-	-
	Pumo2g02068	988	SUPERFAMILY	RING/U-box	21	107	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo2g02068	Pumo-Chr2	40673206	40679645	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo2g02068	1	988	Cell Wall Biosynthesis	AT5G17420	63.269	0.0	1348

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo2g02068	K10999		-	gmx:100777270	1837