Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02050 ATGTTTCCCCCATTTAACGATCAAAATCATCCTAGGCCATCCTTATTGAATCGCGTCAACCAAGCCACCGCAGTAAACCGCCATAATTTGTGGATAGTGGAATTGATGCTGGCTGAAGAGTTGGTGATGATTTTGTTGATTGAAGGATGGTTGGATGACTTGGATTCTAGACTATCATCATCTTCTGAAGCTGCAGTTAAAACATGTGGATTTAGTATTGATAAATTAAGCCATGGTGGCCATGGAAGTAGTACAACTTCTAGGTCTTTTAAAAGAAGAATTAGAAAGGGATCTGAAGGACTGAAGTCAATTGGCCGATCACTTGGATTAGGGGTATCTAGGGCAGTGTTCCCTGAAGATCTTAAAGTTTCAGAAAAGAAGATATTTGACCCTCAAGACAAATTTTTGCTCTCGTGGAATAAGCTTTTTGTTATCTCATGCATTATAGCCGTGTCTGTTGATCCACTGTTTTTTTATCTCCCCGTCATCAATGATTCATTTCACTGTCTTGGTATAGACCGAAAGTTGGCAATTACCGTTACCACCTTGAGGACATTCATTGATGCTTTCTATCTCATACACATGGCTCTCCAATTTCGTACTGCTTATATTGCTCCATCATCTCGTGTTTTTGGACGGGGTGAGCTTGTGATAGATCCAGCACAGATAGCCAAACGATACCTGCGGCGGTATTTCATTATTGATTTCCTATCAGTGTTGCCTTTACCACAGATTGTGGTTTGGAGATTTCTGCAGAGGTCACAAGGTTCAGATGTACTTGCAACAAAGCGGGCCCTTCTGTTCATCATTTTGCTTCAGTACATTCCTAGATTTTTCCGGATGGTACCATTGACCTCTGAACTTAAGAGAACAGCTGGTGTCTTTGCTGAAACTGCATGGGCAGGGGCTGCATATTATTTGCTATTATTTATGCTTGCTAGTCATATAGTTGGGTCTTTTTGGTACTTGTTAGCTGTTGAACGCAATGACTTTTGCTGGCAAAAGGCTGTTAGTGACAACGGGTACAATAAAAATTTCTTGTATTGTGGCAACCAATACATGGAAGGTTATAGTGCCTGGCAGAATAGAAGTAAAGATATTCTTACATCACAGTGCTCTGCAGATAATGATAATTTTGACTATGGAATTTTCAAACAAGCCTTGTCATCTCGTATTGTTTCATCTAAGAAGTTCTTCTCCAAGTACTGTTACTGTTTATGGTGGGGGCTCCAGAATTTAAGTACACTTGGCCAGGGGCTTCAAACTAGCACCTACACTGGGGAGGTTATCTTTTCAATAGCACTAGCCATAGCTGGCCTTATCCTCTTTGCACTTCTGATTGGTAACATGCAGACATATCTTCAGTCTCTTACAATTAGACTTGAGGAAATGAGAGTCAAAAGACGTGATTCAGAACAGTGGATGCATCATCGCTTGCTCCCACAAGAGCTTAGAGAGCGTGTGAGACGATATGATCAATACAAGTGGTTGGCAACACGTGGTGTAGATGAAGAAAATTTGGTTCAGAGTTTGCCAAAGGATCTTCAAAGAGACATTAAGCGTCACCTTTGTCTGGCTCTAGTGAGAAGGGTTCCACTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATATGTGAGAGACTGAAGCCATGTTTATTCACAGAGAGTACTTACATCGTTCGCGAAGGAGATCCAGTTGATGAGATGCTTTTCATCATCCGGGGTCGCCTTGAGAGTGTCACAACAGATGGTGGGAGGAGTGGATTCTTCAATCGTGGCTTTTTAAAAGAGGCTGACTTCTGTGGGGAGGAGCTTTTGACCTGGGCACTGGATCCCAAATCTGGCTCCAACCTCCCATCTTCCACTCGAACAGTTAAAGCTTTAACAGAAGTTGAAGCTTTTGCCTTAACTGCTGAAGAGTTAAAGTTTGTTGCCAGCCAGTTCAGGCGCCTGCACAGTAGACAGGTTCAGCACACCTTTCGCTTTTACTCCCAACAATGGAGAACCTGGGCAGCATGCTTCATTCAAGCAGCATGGCGTCGATATTCCAAGAGGAAAACTATGGAGCTTCTTCGGAAGGACGAAACCGAGTCAGAGGGAGCTCGCAGCAATGCCGGTGGCAGTTCGTACAGCCTTGGTGCCACCTTCTTGGCCTCAAGATTTGCCGCGAATGCTCTTCGCGGTGTACATCGGAATCGGGAAGCCAAGAGTGCCAGGGAGTTGGTGAAACTACAGAAACCTCCCGAGCCTGACTTTACTGCTGATGATGCAGACTAA 2280 0.4364 MFPPFNDQNHPRPSLLNRVNQATAVNRHNLWIVELMLAEELVMILLIEGWLDDLDSRLSSSSEAAVKTCGFSIDKLSHGGHGSSTTSRSFKRRIRKGSEGLKSIGRSLGLGVSRAVFPEDLKVSEKKIFDPQDKFLLSWNKLFVISCIIAVSVDPLFFYLPVINDSFHCLGIDRKLAITVTTLRTFIDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIIDFLSVLPLPQIVVWRFLQRSQGSDVLATKRALLFIILLQYIPRFFRMVPLTSELKRTAGVFAETAWAGAAYYLLLFMLASHIVGSFWYLLAVERNDFCWQKAVSDNGYNKNFLYCGNQYMEGYSAWQNRSKDILTSQCSADNDNFDYGIFKQALSSRIVSSKKFFSKYCYCLWWGLQNLSTLGQGLQTSTYTGEVIFSIALAIAGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLATRGVDEENLVQSLPKDLQRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTESTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEADFCGEELLTWALDPKSGSNLPSSTRTVKALTEVEAFALTAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKTMELLRKDETESEGARSNAGGSSYSLGATFLASRFAANALRGVHRNREAKSARELVKLQKPPEPDFTADDAD 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02050 759 ProSiteProfiles cAMP/cGMP binding motif profile. 533 663 IPR000595 -
Pumo2g02050 759 ProSiteProfiles IQ motif profile. 669 698 IPR000048 GO:0005515
Pumo2g02050 759 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 120 753 - -
Pumo2g02050 759 Pfam Cyclic nucleotide-binding domain 555 644 IPR000595 -
Pumo2g02050 759 Pfam Ion transport protein 138 459 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pumo2g02050 759 PRINTS EAG/ELK/ERG potassium channel family signature 402 419 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo2g02050 759 PRINTS EAG/ELK/ERG potassium channel family signature 195 204 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo2g02050 759 PRINTS EAG/ELK/ERG potassium channel family signature 446 455 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo2g02050 759 PRINTS EAG/ELK/ERG potassium channel family signature 496 503 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo2g02050 759 PRINTS EAG/ELK/ERG potassium channel family signature 312 322 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo2g02050 759 PRINTS EAG/ELK/ERG potassium channel family signature 428 439 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo2g02050 759 SMART cnmp_10 533 664 IPR000595 -
Pumo2g02050 759 SUPERFAMILY Voltage-gated potassium channels 130 455 - -
Pumo2g02050 759 FunFam Cyclic nucleotide-gated ion channel 1 460 524 - -
Pumo2g02050 759 FunFam Cyclic nucleotide-gated ion channel 1 531 649 - -
Pumo2g02050 759 Gene3D Helix hairpin bin 461 524 - -
Pumo2g02050 759 SUPERFAMILY cAMP-binding domain-like 462 653 IPR018490 -
Pumo2g02050 759 MobiDBLite consensus disorder prediction 734 759 - -
Pumo2g02050 759 Gene3D - 141 458 - -
Pumo2g02050 759 CDD CAP_ED 533 664 IPR000595 -
Pumo2g02050 759 Gene3D Jelly Rolls 531 651 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02050 Pumo-Chr2 40233323 40246521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02050 57 756 Ion Channels AT5G57940 79.433 0.0 1134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02050 K05391 - gmx:100820202 1335.86