Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02038 ATGGGAGAGGAAGAAGAGACGCAGCGACGAGTCGCTGACTCGTCCCTCTCCACTGAGTCACCACGCGCTTCCAGTCCTTCTGATGATGCGCCACCCAACTCGGAAACCCTAGTTCTCGATGCTCATATGCAGGGAAGCTCTACCGCATGTAAGGGTGAAAAAGCTGAGAGTAAGGAGTCAGCTCAGCCTCCTGACAAGGAAACTATTGTAAAAGATGCAGTTGAGGCACCTGAAAAACAGACAGAAAATCAACTTCAGGTGTCTGTTTGTTCAACTTCATTATCTGAACTATCACCAACTTCTGTTTCACAGTCTTTATCATCTGCCACTAGTCCAACTGTACCAGAACAAAGACTGTCTGCTCCTAAGGCTAGTAGTGTACAAGTGCCGAAAGTTGACAAAAGAACTCCTTCTGATGGTACAACCTTATCTCCTGTTTCTGTTGCAAGGGCATCTGCATCTGATGGATACAACTGGCGGAAGTACGGCCAGAAGCAAGTAAAGAGTCCTATGGGTTCTCGAAGCTATTACAGGTGTACCCATTCAAATTGTTGTGCTAAGAAGATTAAATTTTGTGACCATTCAGGACATGTGATAGAGATTGTTTATAAAAGTCAACATAGTCATGATCCCCCACATAAAATTGATACCACTAAGGAAAGTAAGTTCCTGCCTCCCACTGAACCTAAAGTAGAAAGCAGTGTTCCAAAGCAGTCTATCAGAGTTCTGAATGATTCTGGTCCATCATCTTCTCCAAAAGAACCTTTACAAAAAGCACCCTGCAGTGCTGATAAGAATCTAGAAAACTCATCTAATGGTGAGAATGGAAAAGTTATTTTGAAGGAAGAGCATGTTAATGATCCAGAGCCAAAAAGAAGGCAAGTTGCATATTGGACAAAGGTGATTCAACAGTGCTTGGATTCAGCAGTAAAACCGGGCAAGAAATCAAAGTTTGTTGTACATGCGGCAGAGGATGTGGGGATATCAGGTGATGGATACCGGTGGCGCAAGTATGGACAAAAGTTGGTGAAGGGAAATCCACATTTCAGAAACTACTACAGATGCACTTCTGCTGGATGTCCTGTCCGAAAGCACATTGAGACTGCTGTGGATAACTCAAAAGCTCTCATCATAACATACAAGGGAGTGCATGATCATGACATGCCTGTGCCCAAGAAACGACATGGCCCGCCAAGTGCTTCGCTCGTGGCTGCTGCAGCACCTGCTTCAATGAACAATTTGCAGTTCAAAAACACTGGCTTGCTACAAAACCAGGAAACTGAAGCTCAATGCTCAGAGGAAACAGAAGGAGAATTAACCGGGGAAGCGTTGGACCTCGGGGGCGAGAAAGCAATCGAGTCGGCTCGAACTCTTCTGAGCATAGGTTTTGAAATTAAACCTTGTTGA 1407 0.4471 MGEEEETQRRVADSSLSTESPRASSPSDDAPPNSETLVLDAHMQGSSTACKGEKAESKESAQPPDKETIVKDAVEAPEKQTENQLQVSVCSTSLSELSPTSVSQSLSSATSPTVPEQRLSAPKASSVQVPKVDKRTPSDGTTLSPVSVARASASDGYNWRKYGQKQVKSPMGSRSYYRCTHSNCCAKKIKFCDHSGHVIEIVYKSQHSHDPPHKIDTTKESKFLPPTEPKVESSVPKQSIRVLNDSGPSSSPKEPLQKAPCSADKNLENSSNGENGKVILKEEHVNDPEPKRRQVAYWTKVIQQCLDSAVKPGKKSKFVVHAAEDVGISGDGYRWRKYGQKLVKGNPHFRNYYRCTSAGCPVRKHIETAVDNSKALIITYKGVHDHDMPVPKKRHGPPSASLVAAAAPASMNNLQFKNTGLLQNQETEAQCSEETEGELTGEALDLGGEKAIESARTLLSIGFEIKPC 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02038 468 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 91 417 IPR044810 GO:0003700
Pumo2g02038 468 MobiDBLite consensus disorder prediction 13 32 - -
Pumo2g02038 468 MobiDBLite consensus disorder prediction 204 286 - -
Pumo2g02038 468 ProSiteProfiles WRKY domain profile. 324 389 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo2g02038 468 SMART WRKY_cls 153 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo2g02038 468 SMART WRKY_cls 329 388 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo2g02038 468 MobiDBLite consensus disorder prediction 1 144 - -
Pumo2g02038 468 Gene3D WRKY domain 313 390 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo2g02038 468 Gene3D WRKY domain 142 213 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo2g02038 468 MobiDBLite consensus disorder prediction 52 78 - -
Pumo2g02038 468 MobiDBLite consensus disorder prediction 79 124 - -
Pumo2g02038 468 SUPERFAMILY WRKY DNA-binding domain 151 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo2g02038 468 MobiDBLite consensus disorder prediction 232 256 - -
Pumo2g02038 468 MobiDBLite consensus disorder prediction 204 226 - -
Pumo2g02038 468 SUPERFAMILY WRKY DNA-binding domain 324 389 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo2g02038 468 FunFam WRKY transcription factor 314 390 - -
Pumo2g02038 468 ProSiteProfiles WRKY domain profile. 148 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo2g02038 468 Pfam WRKY DNA -binding domain 331 386 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo2g02038 468 Pfam WRKY DNA -binding domain 155 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02038 Pumo-Chr2 39865629 39873935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02038 66 468 WRKY Transcription Factor Family AT4G30935 51.559 1.12e-121 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo2g02038 WRKY 1.9e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02038 - - gmx:100800480 714.146