Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02027 ATGGTGTGTTTGGGGTTTGACATGGTTGAGGTTGACTCTCAAAGATTGCAACTTGAGAGGAGGGAAGTGGGGATTTTGCTGAGAATTGCATTTGGGTGGTTGGTGTTTCTGTTGTTTCTTACTCCAGTGGCAGGATTGAGACCCTTGCGGGACAGAACTAATTCATGGGGTGATGAGTGGGTATTTACAAGAAAAGACGAAAGTGACTTAGGTCCATTTTCTCAATGGAACATAACTGGAACTTACAGAGGGACTTGGAAGTTTTTGGATACTACAAATGGCTCTACCAAATTTCCAGACATCAGAAAAATAAATGGAAATTCTGTAATTGAATTAGTTAGTATGCCCACAAAGATAACTGGTGTACATTATGTGCAGGGGGTAGTCATATTCCATGATGTATTTGACAATGAATACAATGTTGGTGGCGCTCAAATCAGAGTAGAAGGTGTATATATATGGCCTTATAGGCAGCTTCGAATGGTAGCCAACAGCGGAAAAGAGGGAGGGTTAAATCAGGATGGAGATTATATTTTATCCAATCCATATCATCTGCTTGGAGTTTTCTCTTCTCAAGTATTCCAAGAGTCTTCACGACATAAGATGTGGAGAAGAAAGCATTCTCCATTACATGGCATGGAGAAACACTGCAATGTAGAAATCGCTGCACAGGTTTCACGCCTATCATCATCAAAACATGAAGGGGAGCATGATTCTTTTCAGCTAGAAGGGTTAATGGAGAGTCCGTCTGTGGACGATGATGGGGACTGCTTCTCGCCTTTACAGTTAAATGCAACATCTATTAACATTGAAGCCTACTATAATAAAGCAGTGAACTATACCTTGATGGTTACTTTTGTATCGTTTTTGCAAGTTCTTCTATTAATTCGGCAAATGGAGCATAGCAACACCCAATCTGGGGCTGCTAAGGTTTCAATATTAATGATTGGTCAGCAAGCTATAATAGATGCTTATCTTTGCCTTATACATTTGACTGCAGGAATACTAGTTGAATCCTTGTTCAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTGGTTTTCTCAATATTTGAGATGAGATATCTCCTTGCCATCTGGAAGGCAAGTAGGCCTTTGAGCAATGGTGAAGGTTGGGAGACAATGAGGCGTGAGTTGTCAGTTTTATACAGCCGTTTCTATGGGATCCTATTGGGAGGCATACTGCTCATGTATGAATTCCATAATCATTTGAGACCTATTCTTCTTCTTGTATACTCCTTTTGGTTACCTCAGATAATCACCAATGTTATTCGTGACTCGCGCAAGCCTTTGCATCCTCATTATATCTTAGGCATAACTGTTACTCGGCTAGCAATCCCATTATATATATTTGGTTGTCCTAACAACTTCTTGCGCATAGAACCAGATCAGAGCTGGTGTGTTTCTTTGGCTATATTTGTTGGACTTCAAGCTGCAATTCTCTTGCTTCAGCACTATTTTGGGTCCTTGTGGTTCATTCCTCGTCAGTTTCTACCTGAGAAATACTGCTATTATAGGAGGTTTGCTCAACATACAAATCATGCCACAGACTGCGTTATATGCATGACAGCCATTGATCTTTCTCCGCGATCTAATTGCATGGTGACCCCTTGTGATCATTTTTTCCACTCTGGCTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCTACTTGCCGGCGCCCTCTTCCACCTGCATGA 1725 0.4104 MVCLGFDMVEVDSQRLQLERREVGILLRIAFGWLVFLLFLTPVAGLRPLRDRTNSWGDEWVFTRKDESDLGPFSQWNITGTYRGTWKFLDTTNGSTKFPDIRKINGNSVIELVSMPTKITGVHYVQGVVIFHDVFDNEYNVGGAQIRVEGVYIWPYRQLRMVANSGKEGGLNQDGDYILSNPYHLLGVFSSQVFQESSRHKMWRRKHSPLHGMEKHCNVEIAAQVSRLSSSKHEGEHDSFQLEGLMESPSVDDDGDCFSPLQLNATSINIEAYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIIDAYLCLIHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPLSNGEGWETMRRELSVLYSRFYGILLGGILLMYEFHNHLRPILLLVYSFWLPQIITNVIRDSRKPLHPHYILGITVTRLAIPLYIFGCPNNFLRIEPDQSWCVSLAIFVGLQAAILLLQHYFGSLWFIPRQFLPEKYCYYRRFAQHTNHATDCVICMTAIDLSPRSNCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02027 574 CDD RING-H2_TUL1-like 519 573 - -
Pumo2g02027 574 ProSiteProfiles Zinc finger RING-type profile. 525 568 IPR001841 -
Pumo2g02027 574 Pfam Ring finger domain 524 568 IPR001841 -
Pumo2g02027 574 SMART ringv_2 524 568 IPR011016 GO:0008270
Pumo2g02027 574 SUPERFAMILY RING/U-box 506 573 - -
Pumo2g02027 574 FunFam E3 ubiquitin-protein ligase, putative 511 574 - -
Pumo2g02027 574 SMART ring_2 525 567 IPR001841 -
Pumo2g02027 574 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 512 574 IPR013083 -
Pumo2g02027 574 PANTHER RING ZINC FINGER PROTEIN 131 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02027 Pumo-Chr2 39564787 39577237 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02027 525 568 C3H Transcription Factor Family AT3G58720 40.909 1.19e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02027 K23788 - gmx:100802452 1112.44