Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02023 ATGCAGCCCTGTAGCAGAGAAATGCAAGGACTCAACTCCCTCTTAAACTCCTCCCAAATCTCCCTCCAAGACCTTCACACCTCAAACCAGATCCAAAATTCACACATGAACAACCAACATCAACAGCATCAGCAACAACTTTCTCACTTTGACCCAACCTCCCACGACGACTTCCTTGAACAAATGCTCTCTTCCTGCGCCTGGCCTGACCTAACTCCAAACAAGCCCTTATGGGACCCTAACCCTCCCAATTCCCTCTCCGACGAAACGACGCCGTCCAACAACGACACCACTAATGTCGCTTTCCCCTTCGACGACCACTCCACCTTAGCCTCCAAGTTCCGCAACCACCAGATCAGCGCCAACAACACCACACCCAAAAACGCCGCCGCCGCAGCAGCAGCTCTCATGCTCCAACACCAACTCCTCATGTCCCGAGACTCTCCCCTCCTCAACCTGCCGCTTTCCCTACCCGGAAACGACGTCGTTGATGCTTCTTCCTTCAAATCCCCCAATCCCGTACCACACAATTCCACTATAACCGTAAATAAATTTATCTTTTCTTTTCTTTTTTCTCCTAATTTTATACCTAATTTATTTTTATTTTTCAGGGAGGTGGTGAGGCCTCAGTCCAAGCTCTCTACAACGGGTTCGCCGGATCTCTGCATGGCGCAGGCCAATCCTCCAACCAGACTCAGCATTTTCAACACCCTCATGGAAGTTCGAATCCGATGCAAGGGCAAAATTTTGGTGCGCCAGCTGGTGGTGGTGGTGGCGGCGGCTAACCAAGCTGCGGCGAGTGGCGGAGCCGGTGGCGCGCCGGCTCAGCCGAGGCAGAGGGTTCGAGCCAGGAGAGGTCAAGCCACGGACCCACACAGCATCGCTGAAAGGTTACGAAGGGAGAGAATCGCGGAGAGAATGAAGGCCCTACAGGAACTGGTTCCCAATGCCAACAAGACAGACAAGGCATCCATGCTGGATGAGATCATCGATTACGTGAAGTTCCTGCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGATTGGGCGGTGCAGCTGCTGTCGCTCCCCTTGTTGCTGATATGTCCTCTGAGGGAGGCGGTGACTGCATCCAAGCCAACGGCAACAGTAACGGCGGTGGGGCCCACAACAACAACAACCAAACGACAGCGACAACCTCAAACGACAACAGCCTCACGATGACGGAGCACCAGGTCGCGAAACTCATGGAGGAAGACATGGGTTCCGCCATGCAGTACCTTCAAGGGAAGGGCCTTTGCCTCATGCCAATTTCCCTCGCCACTGCCATCTCTACTGCCACGTGTCACCCCAGGAACCCCTTGATCAACGCCGCCGTCGCCGCCACCCAGATTCCGACCACCGCCGCGGCCAACCCCACCGGCGAAGGGCCCTCGTCTCCGAGCTTGTCCGTGCTCACGGTGCAGTCCGCCGTCGCGGGCAGCGACGGCGCCGCCGCCGTCAAGGACGCTGCCTCCGTTTCGAAACCGTGA 1509 0.5586 MQPCSREMQGLNSLLNSSQISLQDLHTSNQIQNSHMNNQHQQHQQQLSHFDPTSHDDFLEQMLSSCAWPDLTPNKPLWDPNPPNSLSDETTPSNNDTTNVAFPFDDHSTLASKFRNHQISANNTTPKNAAAAAAALMLQHQLLMSRDSPLLNLPLSLPGNDVVDASSFKSPNPVPHNSTITVNKFIFSFLFSPNFIPNLFLFFREVVRPQSKLSTTGSPDLCMAQANPPTRLSIFNTLMEVRIRCKGKILVRQLVVVVAAANQAAASGGAGGAPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGDCIQANGNSNGGGAHNNNNQTTATTSNDNSLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHPRNPLINAAVAATQIPTTAAANPTGEGPSSPSLSVLTVQSAVAGSDGAAAVKDAASVSKP 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02023 502 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 287 336 IPR011598 GO:0046983
Pumo2g02023 502 SMART finulus 293 342 IPR011598 GO:0046983
Pumo2g02023 502 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 66 436 - -
Pumo2g02023 502 MobiDBLite consensus disorder prediction 81 96 - -
Pumo2g02023 502 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 285 347 IPR036638 GO:0046983
Pumo2g02023 502 FunFam Transcription factor bHLH66 284 349 - -
Pumo2g02023 502 MobiDBLite consensus disorder prediction 74 96 - -
Pumo2g02023 502 Gene3D - 282 344 IPR036638 GO:0046983
Pumo2g02023 502 Pfam Helix-loop-helix DNA-binding domain 292 337 IPR011598 GO:0046983
Pumo2g02023 502 MobiDBLite consensus disorder prediction 371 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02023 Pumo-Chr2 39433312 39436935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02023 261 501 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 63.281 2.23e-93 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo2g02023 HLH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02023 - - gmx:100807286 482.256