Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02006 ATGGATGGATTTAAGCTCCTTGAGTTGGTGGGACTTGAAATGGACCTACCTGTCATCATGTTGTCAGCACACAGTGATACAAAGCTGGTGATGAAAGGTGTTACGCATGGTGCATGTGACTATTTGCTGAAACCTGTTCGAATTGAAGAGCTGAAGAACATATGGCAACATGTAGTCCGGAGAAAGAGTTTTGATAGCAGGGATCAGAACAAGCCTTCTAATGAGGAGAAGGCTCCTAATATTGCTGCAGAAGGTAGTCAAGGCCTAAGATCAGAAAACAGTGATACTGACCAGAATAAAAGGCTTGGTAAAAAAAGGAAGGACCAAAGTGAGGAAGAAGAAGAAGAAGAAGATGGGGAAGGGAATGGAGATGATGAGGACCCCTCAGCACAGAAGAAACCTCGTGTAGTTTGGTCTGTCGAGCTGCATAGAAAATTTGTTGCTGCAGTTAATCAACTTGGCTTAGATAAGGCTGTTCCCAAGAAAATACTTGACCTGATGAATGTTGAAGGACTTACCAGGGAAAATGTGGCAAGCCATCTACAGAAGTATAGACTCTATCTGAAAAAGGCAGCCCAGCAAGCCAACATGGTTGCTGCATTGGGTGGTAGTGATTCTTACCTTCGTATGGGTTCAATAGATGGATATGGAGATTTTTGCACCTCATCTGGATCTGGAAGGATCGCAAACACTACATTACCATCATATGCATCTACTGGAATTTTCGGTAGGCTGAATTCCCCAGCTGGCCTGAACATGAGAGGAATTAGTTCTTCTGCACTTATCCGGCCTGTTCAGTCTCAAAACATCAACAGCTCCTTAAACACACTTGGAAACATTCAGCCATCCATTTTTCCTGCAAATCAAAGCTCAAGTTTATTACAGGGCATTCCGACATCAATTGAGCTTAACCAATCTAAGCAAAGCAACTGTACAACTGGAATATCGCAGTTAAACCAAGTTGATTCAAGTGGATTTACAGTTGCTTCTGGCTTCCCTGACAGTAGGGCTACTGTTAATGGTGCGAGCAATTCTCTACCATGTGTCTCAAATAATCATATAATGTTACAAGGAAATCCACAACAAACACATAGCCCGGGAGCATATAGAAATCAGTCTTCTGTTAGAGCGGCTTCTTTGAGCACAGAATCTTTTGACATGGGCATTTGTAGTTCTTCTAATTTGTTGGATTATAACCGGTGTAATGAAAACTGGCAGAATGCTGCTCAGTTATCTAAATTTCCTGCCAATTCTTTGCCACTGTGTGAGGCTTTCAGCAATGACCAACTGCCTCCCACTAGCATCAATGTTTCCAATTCAAGTACTCACATTGGCAACAATTCTGTTGATTTTTCTTCTAGAATGGCAATTCCCGTTCCTTTGGAGGATGCCAGAAATGAGTTGCGATGCCAAGAAGGCTTGATTGGGAATATCATTCAGCCGTCAAGCTACACACCACAACAAAGGTGGGATGAACATAAACTGGATTATAACCAAAACATGAATCGTCCCTTCAATCCTGTAAATTCACATGCTTCTTCCAGTGGAGTGACAAGTTCTATGGGGCATGGTTTAAACCAAAATAATACAATTTGTAGCAATAGAGTTGATGCATCTTTGGTTGGCCAACTAAATGGGGCATCCTCATCAATCAGTCGGTGCACTGAAGTTGAGAAATTCTCTTCAGACATTCGATTGAAGCCAAATGAAGCCTACATTTTGGAGCAAATGAAGTCCCAAGATGGATTTATGCAGAATACTTTTGGGACCTTGGATGACATAATGGGTGCAATGGTCAAAAGGGAGCAAAATGAGTTGACATTGTTGGATGGAGAAATGGGATTTGATGCCTACCCTGTTGGATCATGCAACTGA 1875 0.4208 MDGFKLLELVGLEMDLPVIMLSAHSDTKLVMKGVTHGACDYLLKPVRIEELKNIWQHVVRRKSFDSRDQNKPSNEEKAPNIAAEGSQGLRSENSDTDQNKRLGKKRKDQSEEEEEEEDGEGNGDDEDPSAQKKPRVVWSVELHRKFVAAVNQLGLDKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKKAAQQANMVAALGGSDSYLRMGSIDGYGDFCTSSGSGRIANTTLPSYASTGIFGRLNSPAGLNMRGISSSALIRPVQSQNINSSLNTLGNIQPSIFPANQSSSLLQGIPTSIELNQSKQSNCTTGISQLNQVDSSGFTVASGFPDSRATVNGASNSLPCVSNNHIMLQGNPQQTHSPGAYRNQSSVRAASLSTESFDMGICSSSNLLDYNRCNENWQNAAQLSKFPANSLPLCEAFSNDQLPPTSINVSNSSTHIGNNSVDFSSRMAIPVPLEDARNELRCQEGLIGNIIQPSSYTPQQRWDEHKLDYNQNMNRPFNPVNSHASSSGVTSSMGHGLNQNNTICSNRVDASLVGQLNGASSSISRCTEVEKFSSDIRLKPNEAYILEQMKSQDGFMQNTFGTLDDIMGAMVKREQNELTLLDGEMGFDAYPVGSCN 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02006 624 MobiDBLite consensus disorder prediction 94 111 - -
Pumo2g02006 624 FunFam Two-component response regulator 129 192 - -
Pumo2g02006 624 PIRSF RR_ARR_type-B 1 624 IPR017053 GO:0003677|GO:0003700|GO:0009736
Pumo2g02006 624 ProSiteProfiles Response regulatory domain profile. 1 59 IPR001789 GO:0000160
Pumo2g02006 624 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 278 IPR045279 GO:0009736
Pumo2g02006 624 Pfam Myb-like DNA-binding domain 135 185 IPR001005 -
Pumo2g02006 624 Pfam Response regulator receiver domain 1 53 IPR001789 GO:0000160
Pumo2g02006 624 SUPERFAMILY Homeodomain-like 131 190 IPR009057 -
Pumo2g02006 624 Gene3D - 1 86 - -
Pumo2g02006 624 SUPERFAMILY CheY-like 1 66 IPR011006 -
Pumo2g02006 624 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 130 189 IPR017930 -
Pumo2g02006 624 Gene3D - 129 191 - -
Pumo2g02006 624 MobiDBLite consensus disorder prediction 63 133 - -
Pumo2g02006 624 NCBIfam myb-like DNA-binding domain, SHAQKYF class 133 186 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02006 Pumo-Chr2 38866786 38870641 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02006 2 619 Response Regulator Gene Family AT5G58080 34.554 1.81e-86 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pumo2g02006 Response_reg 2e-07 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02006 K14491 - gmx:100776075 1132.09