Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02005 ATGGCTGTGGAAAACCAAAGGGGTCATTTGGGTGATGAAGATGGGGGTTGTGACCGTTTTCCTGTGGGTATGAGTGTTCTGGCTGTGGATGATGACCCAATTTGCCTCAAGGTGTTGGAGACTCTGCTTCGCAAATGCCAGTATCAAGTAACTACTACTAATCAGGCAGTTGAGGCGCTGAAAATGTTGAGGGAAAACAGAAACAAGTTTGACCTTGTTATTAGCGATGTGAAGTATGCCTGA 243 0.4568 MAVENQRGHLGDEDGGCDRFPVGMSVLAVDDDPICLKVLETLLRKCQYQVTTTNQAVEALKMLRENRNKFDLVISDVKYA 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02005 80 SUPERFAMILY CheY-like 23 77 IPR011006 -
Pumo2g02005 80 ProSiteProfiles Response regulatory domain profile. 25 80 IPR001789 GO:0000160
Pumo2g02005 80 Gene3D - 13 79 - -
Pumo2g02005 80 Pfam Response regulator receiver domain 26 78 IPR001789 GO:0000160
Pumo2g02005 80 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 78 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02005 Pumo-Chr2 38866107 38866784 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02005 18 77 Response Regulator Gene Family AT2G25180 78.333 1.99e-28 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo2g02005 Response_reg 1.6e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02005 K14491 - gmx:100807822 132.494