Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02000 ATGGTCTCCAGAATTGTTATTGCCCTTGTTCTTTTTCAAGTTCTTCTCTGCCAAGAGTTTGAAGCTTTAGAAGCACAAACTTGGGTACAGGCTGGTTATTGGTATTCTGGGAGTGGATTTCCTGTTTCAGACATTAACTCTGCTTTTTATACTCACCTCATATGTGCTTTTGCCGAATTGAACTCTTCCACATATGACCTCTCTGTCTCCCCAGATGATGAGCAATCCTTCTCTTCATTCACAAGTACTGTCAAACAAAGGAATCCATCCATCACTACACTGATGTCTATTGCAGGTGGAAATGGTAACTACACTGTCTTATCATCAATGGTAAGCAAAGCTTCTTCAAGGAAATCTTTCATTCAGTCTTCAATAAGAATAGCCAGGCTTTATGGTTTTCAAGGCCTGGACCTGTCATGGGTTTCTGCTAACACAAGTTCTGACATGAGCAACATGGGAAGGCTTTTTCAGGAGTGGAGAGCAGCTGCAAAATCTGAGGCAGCAAACTCTACCACTCAAGAGTTGATCTTAACTGCATCTGTTCAGTTTAGACCAGGTTTGGAATTCTCATCTTACCCAGTAGAGTCTATTCGAAGTAGCTTGAATTGGGTGCATGTTATGGCTTATGATTACTACATGCCTCAGTGGGCAAATTTCACTGCTGTACATGCAGCCTTGTATGATCCTTCAAGTTATGTAAACACAAACAATGGTATCAAGGAATGGATTGGTAGTGGAGTAGTGGCTAGCAAGTTGGTTTTGGGGTTGCCTTTCTATGGATATGCCTGGAATCTTAGGAACCCCGAGGACAATGCAATAGGTGCATCAGCAACAGGTTATGATGATGTTGAGGTTGTCAAAGTGAAGGTGTCTTATGCCAGGGAAAAGAAGTTACTTGGCTATGCTGTGTGGGAAGTTCCTTATGATGACAATTGGGCACTTTCTAGAGCTGCAGCTGAACACATCGACCAAAATGGACACCATAGTCGGCGATTATTAGTGATCATGTTGATCACAACTGCTATGTTTGTTCTCCTATTAGGCATCTTAATTTACTACTTAAGGAGGAGATTCCTGAAATCAACAGGAGCGATTTTCAGCACTTTGTACAATGTGAATAAAGACGCTTCAGGACTTTTCCACAGCAACGCTCCTGATTTACGAGTTTTCAGCTTTTCAGATATTGATCAGGCCACAGACAGATTTTCAATTGAAAATAAACTTGGCCAGGGGGGCTATGGTCCTGTTTACAAGGGCATCCTAACAAACGGTCAAGAAGTAGCTGTGAAAAAACTATCAAAAGCCTCTACACAAGGATTTGAAGAATTCAAAAATGAGGTGATGCTAACTGCAAGACTCCAACATGTGAATCTTGTTCGGCTGTTGGGTTTCTACATTGATGGAGAAGAACAAATGTTAATCTATGAGTACATGTCAAACAAAAGCCTAGACTTCTATCTATTTGATCCTATCAGACGGTACCTTCTGGATTGGAGAAAACGCATAGACATCATTGAAGGAATTACTCAGGGGCTTCTTTATCTACAAGAATATTCTAGATTGACAATAATTCATAGAGACATAAAAGCTAGCAATATTTTGCTAGACAGTGAGATGAAACCAAAAATCTCTGACTTTGGTATGGCAAGAATATTTAGAAAAGACGAACTTGAAGCAAACACAAGCAAAATTGTTGGAACATATGGTTATGTTTCTCCTGAATATGCTATGAAAGGTTTATACTCAACCAAATCTGATGTGTACAGCTTCGGAGTTCTACTTCTACAAATTGTAAGTGGCAGGAGGACAGCATGCTTTTATGGTGAACATGAAAATTTAAACCTTATGGAGTATGCTTGTGAGCTTTGGAAAGAAGGAAAAGGCATGGAGTTTGCGGATCCTTCACTTGATGACACACATTCAATGTGTAAATTATTGAGGTGCATGCAAATAGCTTTACTATGTGTGCAGGAAGATGCAAATGATAGGCCGTCTGTGAAGGAAATTTCTTCAATGTTGAAAAGTGACACTATTCTGATAATCCCCCAAAGGCCAGCATTTTCAACAAATAAAGATGAGCAGAAACCAAATGAATTTATAATGCACGAAGAAAAGTTTTCAATTAATGATGCAACAATCTCTCAAGTTGTAGCTCGATAG 2160 0.3968 MVSRIVIALVLFQVLLCQEFEALEAQTWVQAGYWYSGSGFPVSDINSAFYTHLICAFAELNSSTYDLSVSPDDEQSFSSFTSTVKQRNPSITTLMSIAGGNGNYTVLSSMVSKASSRKSFIQSSIRIARLYGFQGLDLSWVSANTSSDMSNMGRLFQEWRAAAKSEAANSTTQELILTASVQFRPGLEFSSYPVESIRSSLNWVHVMAYDYYMPQWANFTAVHAALYDPSSYVNTNNGIKEWIGSGVVASKLVLGLPFYGYAWNLRNPEDNAIGASATGYDDVEVVKVKVSYAREKKLLGYAVWEVPYDDNWALSRAAAEHIDQNGHHSRRLLVIMLITTAMFVLLLGILIYYLRRRFLKSTGAIFSTLYNVNKDASGLFHSNAPDLRVFSFSDIDQATDRFSIENKLGQGGYGPVYKGILTNGQEVAVKKLSKASTQGFEEFKNEVMLTARLQHVNLVRLLGFYIDGEEQMLIYEYMSNKSLDFYLFDPIRRYLLDWRKRIDIIEGITQGLLYLQEYSRLTIIHRDIKASNILLDSEMKPKISDFGMARIFRKDELEANTSKIVGTYGYVSPEYAMKGLYSTKSDVYSFGVLLLQIVSGRRTACFYGEHENLNLMEYACELWKEGKGMEFADPSLDDTHSMCKLLRCMQIALLCVQEDANDRPSVKEISSMLKSDTILIIPQRPAFSTNKDEQKPNEFIMHEEKFSINDATISQVVAR 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02000 719 Gene3D Glycosidases 281 311 - -
Pumo2g02000 719 Gene3D Phosphorylase Kinase; domain 1 367 477 - -
Pumo2g02000 719 SMART 2g34 28 309 IPR011583 GO:0008061
Pumo2g02000 719 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 368 477 - -
Pumo2g02000 719 FunFam Uncharacterized protein 478 682 - -
Pumo2g02000 719 CDD STKc_IRAK 408 674 - -
Pumo2g02000 719 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 97 711 - -
Pumo2g02000 719 Gene3D - 258 278 IPR029070 -
Pumo2g02000 719 ProSitePatterns Serine/Threonine protein kinases active-site signature. 523 535 IPR008271 GO:0004672|GO:0006468
Pumo2g02000 719 SMART serkin_6 402 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g02000 719 Pfam Protein kinase domain 403 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g02000 719 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 28 325 IPR001223 GO:0005975
Pumo2g02000 719 SUPERFAMILY Protein kinase-like (PK-like) 385 683 IPR011009 -
Pumo2g02000 719 ProSiteProfiles Protein kinase domain profile. 402 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g02000 719 CDD GH18_plant_chitinase_class_V 26 315 - -
Pumo2g02000 719 Gene3D Glycosidases 44 257 - -
Pumo2g02000 719 Pfam Glycosyl hydrolases family 18 32 309 IPR001223 GO:0005975
Pumo2g02000 719 Gene3D Transferase(Phosphotransferase) domain 1 478 681 - -
Pumo2g02000 719 SUPERFAMILY (Trans)glycosidases 29 324 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02000 Pumo-Chr2 38767715 38775499 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02000 390 719 Receptor kinase-like Gene Family AT4G11530 53.412 2.88e-117 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo2g02000 Glyco_hydro_18 5.8e-57 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02000 - - gmx:100787480 1237.63