Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01971 ATGGCTTTCCACGACCATCTACAGCACGAAATCACGTTCCAGCCGTTCACGGAGGAGCAGCAGCAGCAGCTAGGTCAGAGCCGGGACATGCAGCGGCTGCTGCCGCTCTCCGGCGGCGCGCCGACGTGGCTGAACGGCAGCCACGCGGCGACTCTCCGGCAGCAGAATTTCCTCCACCTTCAGCCCGACTCCGCCACGGCACCGCAAAACGACGACGTTCGCGGCGCCATGGATCGGAACCGGACCGAGAGCAACTCCGAACCGGACGATTTGGCGGAATACAAAGCAGACATTTTGGGACACCATCTCTACGATCAGCTCCTATCGGCTCACGTCTCGTGTTTGAGAATCGCCACGCCCGTTGACCAGCTTCCACGGATCGACGCGCAGCTTCAGCAGTCGCAGCGCGTCGTTGACAAGTACTCCGGCATCGGAAACGGCGTCGTCGATGACAAAGAACTCGATCAATTCATGACGCATTATGTTATACTGCTCTGTGCTTTCAAAGAACAATTGCAACAACATGTCCGTGTTCATGCCATGGAAGCTGTTATGGCTTGTTGGGAGCTGGAGCAATCTCTACAAAGCTTGACTGGTGTATCTCCCGGTGAAGGAACGGGTGCAACAATGTCCGACGATGAAGAAGACCAGGCAGAAAGTAATGCCAACTTATACGAAGGAAGCATGGATGGCGCTGATAGTCTCAGCTTTGGTCCTCTTGTTCCCACTGAGACTGAAAGATCTTTGATGGAGCGTGTCAGGCAGGAGTTGAAGCATGAGTTAAAACAGGGTTACAAGGACAAGATTGTGGACATACGAGAAGAAATTCTACGAAAGAGAAGAGCGGGGAAGCTACCAGGCGACACCACTTCCCTTTTAAAAGCTTGGTGGCAGTCACATTCTAAATGGCCATATCCAACAGAAGAAGACAAGGCAAGGTTGGTGCAGGAAACAGGCTTGCAATTAAAGCAGATAAATAACTGGTTCATAAATCAAAGAAAAAGGAATTGGCACACTAATCCTTCGTCCTCTAGTGGCTCCAAAAGCAAACGCAAGAGTGAGATTCATGTGACCGGAGCTTACTGGGCAAAGCATGAAACTGAAATGGTGGAATATGGTTGA 1122 0.516 MAFHDHLQHEITFQPFTEEQQQQLGQSRDMQRLLPLSGGAPTWLNGSHAATLRQQNFLHLQPDSATAPQNDDVRGAMDRNRTESNSEPDDLAEYKADILGHHLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSGIGNGVVDDKELDQFMTHYVILLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDEEDQAESNANLYEGSMDGADSLSFGPLVPTETERSLMERVRQELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSGSKSKRKSEIHVTGAYWAKHETEMVEYG 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01971 373 Pfam KNOX2 domain 148 198 IPR005541 GO:0003677|GO:0005634
Pumo2g01971 373 MobiDBLite consensus disorder prediction 198 219 - -
Pumo2g01971 373 FunFam homeobox protein knotted-1-like 3 isoform X1 277 338 - -
Pumo2g01971 373 CDD homeodomain 279 340 IPR001356 GO:0003677
Pumo2g01971 373 Pfam Homeobox KN domain 296 335 IPR008422 GO:0003677|GO:0006355
Pumo2g01971 373 Pfam ELK domain 256 277 IPR005539 GO:0003677
Pumo2g01971 373 ProSiteProfiles 'Homeobox' domain profile. 276 339 IPR001356 GO:0003677
Pumo2g01971 373 SMART ELK_2 256 277 IPR005539 GO:0003677
Pumo2g01971 373 MobiDBLite consensus disorder prediction 63 89 - -
Pumo2g01971 373 SUPERFAMILY Homeodomain-like 278 342 IPR009057 -
Pumo2g01971 373 Pfam KNOX1 domain 94 135 IPR005540 GO:0003677|GO:0005634
Pumo2g01971 373 SMART KNOX2_2 144 199 IPR005541 GO:0003677|GO:0005634
Pumo2g01971 373 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 86 342 - -
Pumo2g01971 373 SMART HOX_1 278 343 IPR001356 GO:0003677
Pumo2g01971 373 MobiDBLite consensus disorder prediction 74 89 - -
Pumo2g01971 373 Gene3D - 275 353 - -
Pumo2g01971 373 SMART KNOX1_2 92 136 IPR005540 GO:0003677|GO:0005634
Pumo2g01971 373 ProSiteProfiles ELK domain profile. 256 276 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01971 Pumo-Chr2 37899944 37906303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01971 92 352 Homeobox Transcription Factor Family AT5G25220 83.019 2.22e-161 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pumo2g01971 KNOX2 1.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01971 - - gmx:100816347 647.506