Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01967 ATGGCTGGAATGCTTCCTGGAGTTGAATGTGCTAGAAGGAGACGGTTCCATCGATGCCTGGATTCAAATTCAAATTCAAATTCAACTTCTTTAGCTTCACATGTATCCACAAGGCGTTCTTCTTTCTCTTTGTATGCTAGCAACCATGAATGTCGTATTGCTTCCTCATCCTCTTCACTGCAAAGAAGCATGTTATACCAGGCACACCCAGATGAGAATATGGTAGGTGTAGCCAGAGAAGCCAAACAGAGATTGGATGACAAGTTCAGAGCACAAAGAATGTCAGAAAACAAAAGGCAAAACAGCACAAAATGTGTGGAGGAGGGCAGAAGAACAAGCATAGCAGAGTTGCACAAAGAGGTATATGGGTCAAAGAAAAGTGGTTCAAGGAGGTTCAGTTGGACCAAGTGGAGCTGGAAGGCCTCAGAACAAGAGGATTGTGCTGTGTGCTTGGAATCATTCAGGGTTGGAGAGACACTGATCCATCTTCCTTGTGCACATAGATTCCATGACAGATGCTTGAAACCATGGTTGGATAATAATTCTCATTGTCCATGTTGCAGAACCACCATTCTTTCCCTCTAG 585 0.4376 MAGMLPGVECARRRRFHRCLDSNSNSNSTSLASHVSTRRSSFSLYASNHECRIASSSSSLQRSMLYQAHPDENMVGVAREAKQRLDDKFRAQRMSENKRQNSTKCVEEGRRTSIAELHKEVYGSKKSGSRRFSWTKWSWKASEQEDCAVCLESFRVGETLIHLPCAHRFHDRCLKPWLDNNSHCPCCRTTILSL 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01967 194 SUPERFAMILY RING/U-box 132 192 - -
Pumo2g01967 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 193 IPR013083 -
Pumo2g01967 194 CDD RING-H2_PA-TM-RING 146 188 - -
Pumo2g01967 194 PANTHER SI:CH211-59O9.10 19 192 - -
Pumo2g01967 194 SMART ring_2 147 187 IPR001841 -
Pumo2g01967 194 FunFam Zinc finger family protein 121 193 - -
Pumo2g01967 194 ProSiteProfiles Zinc finger RING-type profile. 147 188 IPR001841 -
Pumo2g01967 194 Pfam Ring finger domain 146 188 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01967 Pumo-Chr2 37779201 37781061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01967 1 90 C3H Transcription Factor Family AT2G15580 52.632 2.81e-22 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01967 - - gmx:100527583 345.51