Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01963 ATGGGTGTGAAGGACCAAGAGAAAGATATGGATAACACCACAACCAATTCATGGCCTTTGTTGCATTGCCACCTTTTGCTCACGACCCACATGGACAAAAAAGGATCTTTTCTCAGAACTTCAATAACTGATGACACCACCAATAATATCACTGTTCAAAACTCCTTTCCTTTGGAAAGCATATGTGAGGACGCAGTGGTTGCTGACAAGAAACAGAATCTGATGAATTTTGTCCCGGCTCTTCGGTCTGGAGAGTGGTCTGATATTGGAGAACGCCCTTACATGGAGGATACTCACATATGCATTGGAGATTTGGCAAAGAAGTTTAATTATGATGTACTTCCTGAGGAGGCTGTTTCCTTTTATGGTGTATTTGATGGACATGGAGGGAAGAGTGCTGCACAATTTGTCCGTGATAATCTGCCAAGGGTTATTGTTGAGGATGTTAACTTTCCTTTGGAGCTTGAGAAGGTGGTCAAAAGGTCATTTTTGGAGACTGATGCAGCATTTCTGAAAACATCCTCTCATGAGCCTTCCCTTTCTTCTGGTACAACTGCAATAACTGCAATTATATTTGGAAGGTCCTTACTTGTAGCCAATGCTGGAGATTGCCGAGCTGTCTTGTCCCGCCATGGAAGGGTCATAGAAATGTCCGAAGACCATAGGCCAAACTGCATCAATGAAAGGACGCGAGTTGAGTCCCTAGGTGGCTTCGTTGATGATGGTTACCTGAATGGCCAGTTAGGTGTCACTCGCGCTCTTGGAGACTGGCACCTTGAAGGAATGAAGGAAATGAGTGAAAGAGGAGGACCACTGAGTGCTGAACCTGAACTTAAATTGATGACATTGACCAAAGAAGATGAATTCTTGATAATTGCTAGTGATGGAATATGGGATGTTTTTAGTAGCCAAAATGCTGTGGATTTTGCTAGAAGGAGGCTTCAAGAGCACAATGATGAGAAACAATGCTGCAAGGAGATAGTACAGGAAGCAATCAAGAGAGGATCAACAGATAACTTGACAGTTGTGATGGTATGTTTTAACTTGGATCCTCCACCACCTGTGGTTGTGGAAAGAACACGAGTAAGAAGAAGCATATCTGCAGAGGGACTTCAGAATCTCAAATGCCTGCTAAAAGAATAA 1143 0.4313 MGVKDQEKDMDNTTTNSWPLLHCHLLLTTHMDKKGSFLRTSITDDTTNNITVQNSFPLESICEDAVVADKKQNLMNFVPALRSGEWSDIGERPYMEDTHICIGDLAKKFNYDVLPEEAVSFYGVFDGHGGKSAAQFVRDNLPRVIVEDVNFPLELEKVVKRSFLETDAAFLKTSSHEPSLSSGTTAITAIIFGRSLLVANAGDCRAVLSRHGRVIEMSEDHRPNCINERTRVESLGGFVDDGYLNGQLGVTRALGDWHLEGMKEMSERGGPLSAEPELKLMTLTKEDEFLIIASDGIWDVFSSQNAVDFARRRLQEHNDEKQCCKEIVQEAIKRGSTDNLTVVMVCFNLDPPPPVVVERTRVRRSISAEGLQNLKCLLKE 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01963 380 CDD PP2Cc 82 347 IPR001932 -
Pumo2g01963 380 SMART PP2C_SIG_2 97 347 IPR001932 -
Pumo2g01963 380 SMART PP2C_4 72 345 IPR001932 -
Pumo2g01963 380 Pfam Protein phosphatase 2C 94 339 IPR001932 -
Pumo2g01963 380 Coils Coil 314 334 - -
Pumo2g01963 380 Coils Coil 371 380 - -
Pumo2g01963 380 Gene3D - 64 350 IPR036457 -
Pumo2g01963 380 ProSitePatterns PPM-type phosphatase domain signature. 121 129 IPR000222 GO:0043169
Pumo2g01963 380 FunFam Probable protein phosphatase 2C 22 65 350 - -
Pumo2g01963 380 ProSiteProfiles PPM-type phosphatase domain profile. 82 347 IPR001932 -
Pumo2g01963 380 PANTHER PROTEIN PHOSPHATASE 2C 70 345 IPR015655 GO:0004722|GO:0006470
Pumo2g01963 380 SUPERFAMILY PP2C-like 74 348 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01963 Pumo-Chr2 37760453 37764419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01963 32 378 PP2C-type Phosphatase Gene Family AT2G25620 55.271 1.57e-131 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Pumo2g01963 PP2C 2.9e-70 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01963 K14803 - gmx:100813157 693.345