Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01962 ATGGCTGAACAAACTGAGAAGGCTTTTCTGAAGCAACCCAAAGTGTTTCTATGCTCTAAGAAAGGTGGGAAGGGAAAGAGGCCTGGGAAAGGTGGGAATCGCTTTTGGAAGTCAATTGGGCTTGGATTCAAGACTCCCAGAGATGCCATTGAAGGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGGGGTCGTATCCTAGCCGGTACTTGTCACAGTGCTAAGATGACAAGGACCATTATTGTTGGGAGGAATTATCTTCATTTTATTAAGAAATACCAGAGGTATTCCCCTTTCATAACTTTGGCTAGCAGTTTTCATTGTATTTGCTTACCGGGACAAACATAA 363 0.4353 MAEQTEKAFLKQPKVFLCSKKGGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMTRTIIVGRNYLHFIKKYQRYSPFITLASSFHCICLPGQT 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01962 120 Gene3D - 1 115 - -
Pumo2g01962 120 Pfam Ribosomal_S17 N-terminal 4 72 IPR032440 -
Pumo2g01962 120 SUPERFAMILY Nucleic acid-binding proteins 68 104 IPR012340 -
Pumo2g01962 120 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 10 102 IPR000266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01962 Pumo-Chr2 37749658 37751910 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01962 1 102 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 87.255 1.76e-53 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01962 K02949 - gmx:100500094 198.749