Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01960 ATGGAAATTGAATCACACAATGCTTCTGCAATACAGACTGTTGCTGCCACCGGTCATAACATAAATTTGCTGACTAGTCTGGATTATGAGAGTTTTTGTGACATTCAGAATGATTTAAATAATTTAAAGGTCTCTGACTTTGACCTCTCCGTACTCTTGGAGCAGCTCCCTGATGGCCTCCTCCACACTACCCGCAACACACCGGCCTTCATAGTGTCGGAGATCCTCTACCACGTCGGCTACAACGGCTCCAACGTCGATGCCTGGTCCTGCAGCGTCATCCTTTACAACCTCCTCACCGGCCACCTCCCTTTTGACGACTCCAACATTTCGGCCATGTTTATCGATGATGATGATTAA 360 0.4722 MEIESHNASAIQTVAATGHNINLLTSLDYESFCDIQNDLNNLKVSDFDLSVLLEQLPDGLLHTTRNTPAFIVSEILYHVGYNGSNVDAWSCSVILYNLLTGHLPFDDSNISAMFIDDDD 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01960 119 SUPERFAMILY Protein kinase-like (PK-like) 38 114 IPR011009 -
Pumo2g01960 119 ProSiteProfiles Protein kinase domain profile. 1 119 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g01960 119 Pfam Protein kinase domain 40 110 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g01960 119 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 39 114 - -
Pumo2g01960 119 Gene3D Transferase(Phosphotransferase) domain 1 22 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01960 Pumo-Chr2 37730907 37732365 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01960 37 114 Miscellaneous Gene Families AT3G23000 56.410 1.08e-25 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Pumo2g01960 Pkinase 4e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01960 K12761 - gmx:100305372 108.997