Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01950 ATGGAGCTTGATTTGAATCAGGAGCCTTTGTATCCAACTCATGCTTCAAATGCTAAATTTGATTCTTTATCAGAAGAACTAAAATCTGTCCATGAACATGTGCAGGACCGTATTAGGCACCTTGAAGCAGCAGCCAGGCAGCGCCAAAGGTGGCCGCCGGTTCACTCTCCGATCCAAATAAGCAACTCTGCAGGAGAAACCGTAGTGGTGGCCAATGCTCAAGACGAAGGAAAGGAGCACAAAGAAGTTGAGGAAAGGAAAGCTGAAATTGGGAAAGGGAGCAAGATGAAAGGCGCAGAATTGATAGCTAAAGCATTGGAGGAGGTGGAAGCAGATGCCAGCAAGAAAGGGGGAGGCAGTGGAAATTTTTTTGATTGCAACATATGCTTGAAGTTGGCAAGAAATCCTGTGTTGACCTGCTGTGGTCATTTGTTTTGTTGGCCATGCTTTTATCACTTGCCATATGCCTATTCAAATGCAAAGGAGTGCCCTGCTTGTAAAGGAGAGGTCAATGAAACTGACATTGTTCCAATTTATGGCAATGCCAGTGCCAGTGGCAATAGTGACTTGGAATCAAATGTAGCTGGTTTGAAAGTTCCTCCTCGACCTGTTGCACCCAGAGTTAAGAGTTTTAAGGAGCAACTTGAAGAGTTTCAGGACCTTGAGTCATATCTTTTATGA 681 0.4449 MELDLNQEPLYPTHASNAKFDSLSEELKSVHEHVQDRIRHLEAAARQRQRWPPVHSPIQISNSAGETVVVANAQDEGKEHKEVEERKAEIGKGSKMKGAELIAKALEEVEADASKKGGGSGNFFDCNICLKLARNPVLTCCGHLFCWPCFYHLPYAYSNAKECPACKGEVNETDIVPIYGNASASGNSDLESNVAGLKVPPRPVAPRVKSFKEQLEEFQDLESYLL 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01950 226 SMART ring_2 126 166 IPR001841 -
Pumo2g01950 226 Pfam Zinc finger, C3HC4 type (RING finger) 125 172 - -
Pumo2g01950 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 223 IPR013083 -
Pumo2g01950 226 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 80 213 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pumo2g01950 226 ProSiteProfiles Zinc finger RING-type profile. 126 167 IPR001841 -
Pumo2g01950 226 SUPERFAMILY RING/U-box 123 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01950 Pumo-Chr2 37456920 37457760 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01950 58 216 C3H Transcription Factor Family AT3G58030 40.000 4.92e-33 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01950 - - gmx:100793230 272.322