Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01944 ATGGGGAAGAAAAAGAAGCAGGTAGGAGAAACAAGTGAAGATAGAGGAAATCAGAAGAAAGTTGAAGATAAAAGCCCCAAATCATATGACAATGATACCCTGATGTTTATATTAATGGCTCAAGAGTTGAAGGATGAAGGGAACAAGCTTTTCCAGAAGCGGGATGCTGAAGGAGCTTTGGTAAAATATGAGAAGGCCCTCAAATTGCTTCCAAGAAATCATGTAGATGTGTCCTATCTGCGGAGTAACATGGCTGCGTGCTACATGCAGATGGGTCTCAGTGAGTATCCTAGAGCAATCCATGAATGCAGTTTGGCTCTTGAAGTAACACCAAAATATAGTAAAGCTCTGATGAAGAGGGCAAGGTGCTATGAGGCTTTAAATAGGCTGGATTTATCGCTAAAAGATGTTAGTACTGTTTTGAAGATAGAGCCAAATAATATCATGGCATTGGAGGTCTTGGGTAAGGTGAAACATGCACTTGAAGATAGGGGATTAATAGTAAATGATACAGAAATTGAGTTGCCTCCAGATTATGTTGAACCTCCTGCTTTGCCTCTGGAAAAAGTAGTGAAAGAAAAGACTGCACAAGAAAAAGAGAAACAAAGAGAAGAAGAAGGCTCTTGA 627 0.4003 MGKKKKQVGETSEDRGNQKKVEDKSPKSYDNDTLMFILMAQELKDEGNKLFQKRDAEGALVKYEKALKLLPRNHVDVSYLRSNMAACYMQMGLSEYPRAIHECSLALEVTPKYSKALMKRARCYEALNRLDLSLKDVSTVLKIEPNNIMALEVLGKVKHALEDRGLIVNDTEIELPPDYVEPPALPLEKVVKEKTAQEKEKQREEEGS 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01944 208 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Pumo2g01944 208 Gene3D Tetratricopeptide repeat domain 38 163 IPR011990 GO:0005515
Pumo2g01944 208 SMART tpr_5 78 113 IPR019734 GO:0005515
Pumo2g01944 208 SMART tpr_5 114 147 IPR019734 GO:0005515
Pumo2g01944 208 SMART tpr_5 40 73 IPR019734 GO:0005515
Pumo2g01944 208 MobiDBLite consensus disorder prediction 1 27 - -
Pumo2g01944 208 PANTHER PROTEIN CLMP1 3 203 IPR044517 -
Pumo2g01944 208 SUPERFAMILY TPR-like 40 163 IPR011990 GO:0005515
Pumo2g01944 208 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Pumo2g01944 208 Coils Coil 187 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01944 Pumo-Chr2 37279027 37279653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01944 23 147 Calmodulin-binding Proteins AT3G25230 33.813 5.80e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01944 K26538 - gmx:100820306 366.696