Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01876 ATGAGGACCCAACTTGTGTGTAATGGGTGTAGGAACATCTTGGTTTACCCTAGAGGAGCAACCAATGTGTGCTGTGCATTGTGCAACACCATTACCTCTGTTCCTCCTCCTGGAATGGAAATGTCACAACTTTATTGCGGAGGCTGTAGGACATTGCTAATGTACACACGTGGTGCTACAAGTGTGAGATGTTCCTGCTGTCACACTATTAACCTTGTACAAGAATCTAATCAAGTCAGCCATATTCATTGTGCGAACTGCCGGACAACACTCATGTATCCTTATGGAGCTTCCTCGGTCAAATGTGCAATTTGTCACTATATTACTAATGCCAGTATGACCAATGGAAGGCTTCCAATTCCTGTACAGAGACCAAATGGAACAGCCAACTCTGGAACAGTATCTTCTACTTCATCGTCAATGCCTCATTCTCAGAGCCAAACTGTTGTAGTAGAAAATCCTATGACTGTTGATTCGAGTGGGAAATTGGTGAGCAATGTTGCTGTGGGCGTTACAACAGATAAGAAATGA 531 0.435 MRTQLVCNGCRNILVYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGATSVRCSCCHTINLVQESNQVSHIHCANCRTTLMYPYGASSVKCAICHYITNASMTNGRLPIPVQRPNGTANSGTVSSTSSSMPHSQSQTVVVENPMTVDSSGKLVSNVAVGVTTDKK 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01876 176 PANTHER PROTEIN LSD1 3 175 IPR040319 -
Pumo2g01876 176 NCBIfam zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Pumo2g01876 176 NCBIfam zinc finger domain, LSD1 subclass 81 109 IPR005735 -
Pumo2g01876 176 NCBIfam zinc finger domain, LSD1 subclass 43 73 IPR005735 -
Pumo2g01876 176 MobiDBLite consensus disorder prediction 122 145 - -
Pumo2g01876 176 Pfam LSD1 zinc finger 84 108 IPR005735 -
Pumo2g01876 176 Pfam LSD1 zinc finger 7 31 IPR005735 -
Pumo2g01876 176 Pfam LSD1 zinc finger 46 70 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01876 Pumo-Chr2 35963333 35968022 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Pumo2g01876 zf-LSD1 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01876 - - gmx:100776644 307.375