Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01874 ATGGAGCAGTTGAAATTGCCTGCAGATTCTGAAGCCAAAGAGGATAACCCTTTGGGGCAGAAGCCAAAGAATAACAATGTGCTTGAGTCTTCTGACAGTCTGAGAAATAGAAAGATATCAGCTCGATGGGATCCGGTTGAAGCATGTCGGCCTATAATTGAAGAAGCACTTGTCTTTTATCCTACTATTGAAGAATTTGAAGACACACTCAGTTACATAGCAAAGATACGACCCCTAGCTGAACCCCATGGCATATGTAGGATTGTTCCTCCAGCTTGCTGGACTCCACCCTGTCCTCTTAAGGAGAAAGATCTATGGGAAAGTACTGAATTTCCCACCCGTATTCAACAAATTGATTTGCTTCAAAATAGGGAACCTATGAGGAAAAAAAGTAGGGGAAGGAAGCGAAAACGTAGAAAGAACTCGAAAACAGGCACATGTCGGAGGAAGCCTGCCAATGCAGCTTCTGAAGCTAAGAATGCTTCTGAGTTTGAAGAGAAATTCGGATTCCAATTAGGGTTAGACTTCACGCTTAAAGACTTTCAGCAATATGCTGATTTTTTTAAGGAATGCTACTTTGGGTTGAGAGATGCCAATGGAGACAGAATAGTTAGTGACAGTAACCATCAGAAGAGATGGGAGCCCTCTGAGGAGGAAATTGAAGGTGAATACTGGCGAATAATTGAGCAACCAACTGATGAAGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGAGCACTTGGAAGTGGTTTTCCTAAGGCATCATCCTTAACTGTGAGTGACTCCGATCAATATGCCCTGTCTGGCTGGAATCTGAACAATTTCCCGCGACTGACAGGTTCTGTACTGAGTTATGAAGGAAGTGACATATCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCATCATTTTGCTGGCATGTTGAGGACCATCACCTCTATTCACTAAACTATTTGCACTGGGGTGATCCAAAAGTATGGTATGGGGTACCTGGAAGCCATGCTGCAGCCTTGGAAAATGTAATGAGGAAGCACTTGCCTGATTTATTTGAGGAACAACCAAATCTACTCAATGAACTGGTTACCCAGTTTTCTCCTTCAATTCTTAAATCTGAGGGAGTGCCTGTGTATCGCACAGTTCAGCATTCTGGGGAATTTGTTATTACCTTTCCAAGGGCATATCACGCTGGCTTCAATTGTGGCTTCAACTGTGCAGAGGCAGTGAATGTGGCTCCTATTGATTGGTTAATGCATGGACAGAATGCTGTCGAGCTTTACAGTTTACAATGCCGTAAGACATCATTGTCACATGACAAGCTGTTATTTGGGTCAGCACTGGAAGCTGTACGAGCCCTTGCAGAGCTAGCTCTTGGAAAGGAAACTCCAAAAAATTTGAAATGGAGAAGTGTCTGTGGAAAAGATGGAGATCTTACCAAGGCAGTTAAGATGAACAGTGACTTTGATTTGTACAGGGAAAGAGAATGCTTCTCTTGCTTCTATGACTTGCACCTATCTGCTGTGGGTTGTGAGTGCTCTCCTGACAGATATTCTTGTCTTAAGCATGCTAGTTTGTTCTGCTCGTGCGGAATGGAGAAAAGATTTGTTCTGCTTCGATATACTATAAGTGAGCTAAACAAATTGATTGAAGCATTAGAAGGAGAATCACATGCTATTGAGGTGTGGGGAAATAAAAACTTTGGAATGGTTTCTGCCAATGTCAATGAGGTTTGCATAGATAAACCAGATATTGATAAAGATATGTACAAAACCAAGAATTGTGAAGAAATGGAGAACTCAACTGGTTGTGCAGGAACCAAGGATAGGTCACATTTAAACGCACTTAGCAGTCCTAATAGTCATATTACTTCAGAGATAGTGCAGTCTGAGTCTCACCCTGTAACTTCTAGTGCAGCATATGACAGTATAGATAGTCATAATGATAACAATGATGATAAAAAGTTGGCCACAGACAACGAAGCTATAATGGATCAGGCTGGTTCTCTGGATTTGAATCTTGATGTTATCTCTGGTGAAAATGAAAATCATATGCTGCATATTGCTGATAACCATCATAATAAAGGTGTTTCAGTAGAGGGAAAAGTATGCTGTTCAGAAGCCAAAAGGGAAGAAGACAACATGGAACTTTGTGGTGAGGGTAACTTATCAAACTCGGTTTCTGTTCTAAAGACAGATTTTTCATCATGTTCAAGGGGTGTTTGCAATTATTGTACATTTGATGGTGGAAAAATTGAGATGGATCTGCAAATGGATTCAGATTCAGGAAAGCAGCACGACACAGCTACTAGTATATTTTTCACAGATGAAAGCTGCTTAGTGCAAATGTTTGGTACTTCTGTCAAGCCTGATTCAAGACTCGAGTTAATTTCTTTAGCATTCTTGATCCAACAAGAATCTGTAGGCTATATTTCTGAAGTCATTGATGCTGGATTTCTTGGACCTCTTTTCAAGGTAACCATGGAAGAATGTCCAAGTGAGGCTTTCACAGATACCTCAGCAGATAATTGCTGGGAATCAGTTCTGAAGAGATTACATCATGAAATCATGAGGCGAAGGAGTCTAGGTGAACAAGAACTTCCTCCCTTAGAGCTCCTGAAAAGCATTAACGGTCATAGAATGTTTGGCTTCCTTTTACCATCTGTTATTCAGGCCATCGAAGCTCAAGATCCCAGTCATATGTGTGTAGAGTACTGGAATCACAAAGTTGCCCCTTCAGGCAGTGTTGTTGATAACTTCACATATGGTTCCAGTAGCTCTTCATGTAATATCAATACCAAAATTTTTGGTATTGATTTGATTAAGCAGGAAAAGGATAACATCCTTGAAGAGATGAAACTAATACTGCAAAGGGCAAGTCCTGATGAGTTAAGCACAATGCATAAGTTGCTCAGCTCTGATGCACAGTGCTGTGAGTGGAGAGTGGCATTGATAGCACTGATGGATGAGATCCGAAACGCTTGTCGATAA 2997 0.4124 MEQLKLPADSEAKEDNPLGQKPKNNNVLESSDSLRNRKISARWDPVEACRPIIEEALVFYPTIEEFEDTLSYIAKIRPLAEPHGICRIVPPACWTPPCPLKEKDLWESTEFPTRIQQIDLLQNREPMRKKSRGRKRKRRKNSKTGTCRRKPANAASEAKNASEFEEKFGFQLGLDFTLKDFQQYADFFKECYFGLRDANGDRIVSDSNHQKRWEPSEEEIEGEYWRIIEQPTDEVEVYYGADLETGALGSGFPKASSLTVSDSDQYALSGWNLNNFPRLTGSVLSYEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHAAALENVMRKHLPDLFEEQPNLLNELVTQFSPSILKSEGVPVYRTVQHSGEFVITFPRAYHAGFNCGFNCAEAVNVAPIDWLMHGQNAVELYSLQCRKTSLSHDKLLFGSALEAVRALAELALGKETPKNLKWRSVCGKDGDLTKAVKMNSDFDLYRERECFSCFYDLHLSAVGCECSPDRYSCLKHASLFCSCGMEKRFVLLRYTISELNKLIEALEGESHAIEVWGNKNFGMVSANVNEVCIDKPDIDKDMYKTKNCEEMENSTGCAGTKDRSHLNALSSPNSHITSEIVQSESHPVTSSAAYDSIDSHNDNNDDKKLATDNEAIMDQAGSLDLNLDVISGENENHMLHIADNHHNKGVSVEGKVCCSEAKREEDNMELCGEGNLSNSVSVLKTDFSSCSRGVCNYCTFDGGKIEMDLQMDSDSGKQHDTATSIFFTDESCLVQMFGTSVKPDSRLELISLAFLIQQESVGYISEVIDAGFLGPLFKVTMEECPSEAFTDTSADNCWESVLKRLHHEIMRRRSLGEQELPPLELLKSINGHRMFGFLLPSVIQAIEAQDPSHMCVEYWNHKVAPSGSVVDNFTYGSSSSSCNINTKIFGIDLIKQEKDNILEEMKLILQRASPDELSTMHKLLSSDAQCCEWRVALIALMDEIRNACR 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01874 998 PANTHER LYSINE-SPECIFIC DEMETHYLASE 51 755 - -
Pumo2g01874 998 ProSiteProfiles JmjC domain profile. 265 431 IPR003347 -
Pumo2g01874 998 Pfam JmjC domain, hydroxylase 298 414 IPR003347 -
Pumo2g01874 998 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Pumo2g01874 998 SMART JmjN_1 55 96 IPR003349 -
Pumo2g01874 998 MobiDBLite consensus disorder prediction 1 32 - -
Pumo2g01874 998 SMART cupin_9 265 431 IPR003347 -
Pumo2g01874 998 MobiDBLite consensus disorder prediction 128 146 - -
Pumo2g01874 998 Gene3D Cupin 41 415 - -
Pumo2g01874 998 MobiDBLite consensus disorder prediction 627 656 - -
Pumo2g01874 998 Pfam F/Y rich C-terminus 823 911 IPR003889 GO:0005634
Pumo2g01874 998 MobiDBLite consensus disorder prediction 122 159 - -
Pumo2g01874 998 SMART fyrc_3 825 917 IPR003889 GO:0005634
Pumo2g01874 998 SUPERFAMILY Clavaminate synthase-like 266 451 - -
Pumo2g01874 998 MobiDBLite consensus disorder prediction 1 18 - -
Pumo2g01874 998 Pfam C5HC2 zinc finger 499 551 IPR004198 -
Pumo2g01874 998 Gene3D - 799 905 - -
Pumo2g01874 998 ProSiteProfiles FYR domain FYRC motif profile. 821 911 IPR003889 GO:0005634
Pumo2g01874 998 MobiDBLite consensus disorder prediction 627 647 - -
Pumo2g01874 998 Pfam jmjN domain 58 90 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01874 Pumo-Chr2 35927797 35935769 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01874 64 993 JUMONJI Transcription Factor Family AT4G20400 44.617 0.0 763
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pumo2g01874 JmjC 1.6e-47 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01874 K11446 - gmx:100801775 1758.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g01874 2 35927797 35935769 Pumo2g01874 2 35927797 35935769 ECH