Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01864 ATGGAGGCTCAATTAGAGGGGAAAAATCAGTATTTGTATGGACCTGTGGTGCCAGAGATGAAGAGTGTTGGGAAGAGAAGTTTGGAGTGGGATTTGAATGATTGGAAGTGGGATGGGGATCTATTCACTGCTAGGCAACTGAATTCAGTGCCATCAGATTGTAGGAGCCGTCAGTTGTTTCCTACTGATCCTGAAATTCTTGCAACTGGTGATGCTTCTAACAGTTTGTCTTCTGCATATGATTATGTTAACCCTGGGGAGGGAAAGAGAGAATTGGAGAAGAGGAGGAGGGGTGTTAATGATGAAGGAGGGGTGGAGATGAATGATGGAGCTGGTTCTCTTAATTTGAACCTTGGGGGTCAAGTATACCCTATCATGGAAGGGGAGGAGAAAAGTGGAAAGAAGACAAAGATAACTGCGAGTACTTCGAACCGGGCTGTTTGTCAGGTGGAGGATTGTAGGACTGATCTTAGTAATGCGAAGGATTACCACCGCCGCCACAAAGTTTGTGATATGCATTCTAAGGCTAGCAAGGCACTAGTTGGAAATGTTATGCAGAGATTCTGTCAACAGTGTAGCAGGTTTCACGTTCTTCAAGAATTTGATGAAGGGAAGAGAAGTTGTCGTAGGCGTCTGGCAGGCCACAATAAGAGGAGGAGGAAAGCGCTTCCTGATGCTACTGCAGTTAATGGAGGCTCTCTGAATGAAGAAAAGGGCAGTAGCTATCTGTTAATGAGTCTGCTAAGGATACTGTCCAATATGCATTCAAATGGCTCAGATAATATGAGAAACCAGGATGTTCTATCTCATCTGCTGAGGAACCTGGCAAGTATGGCTGGTACAATTAATGGAAGAAATATAGCATCTTTATTGGAGGGATCTCAAGATTTGGTAAAAGCTGGGACATCTGGAGCTGCACAGAATGTTCCAAACACAAATTCAAATGGTCCTGAATCATCCAGACCTTTTGGTTCTTCTATCAAGATGGATGATGGTCTAATCCGTCAGGACCCTCCAGAGTCTATGGTACAACGTGAGACGACTCCCTCTAATGATATGGCTCAAAAATGTATAGCTTCAGGCAGTGATGGAGGAGGAAGTTTAAAATCTCCTTCAGTACCGCAGTCCTCAAATGCACTTCTATCAAGGGATAGCCTTCCACCCCAATCAGTTGCAGCAGAGACTACAGTTGGAAGAATTGGGTTAAGTAATATTGACCTGAATAATGTATATGATGATGTACAGGATTATGTTGAGAACACGAGGAATTCTCGTCCTCCTCTGCCTTCTGGGAATGGGTCTCTTGATCATCCTATATGGGTCCAATGTGACTCTCTCAAGTCAAGTCCACCGCAGACAAGTAGAAACTCAGATTCAACCTCTACCCAGTCACCATCTAGTTCTAGTGGAGAAGCTCAGAGTCGCACAGATCGAATTGTTTTCAAACTATTTGGCAAGGCTCCAAATGATTTCCCCCATGCTCTCCGGTCACAGATCCTTAACTGGCTATCCCACAGTCCAACAGAGATAGAGAGCTATATAAGGCCAGGCTGTATCATATTGACTATATATCTCCGTCTAGAAAATTCCACTTGGGAAGAGCTATGCTATAATCTAGGATCCAGCTTGAGAAAGCTTGCTGCGTCAAATGATTCTTTCTGGAGAACAGGATGGATATATACAAGAGTGCAGCACTCCGTAGCTTTTCTGTATAATGGTCAGGTGGTCTTAGATGTTCCATTGCGCCTCAAAAGTCCACAGAGTTGTCAAATATTATGCGTTAAACCACTTGCTGTTTCTGCAAGTGCTAGTGCCCAATTTATTGTGAAAGGATTCAACCTTTTGATGTCTAACACGAGGTTGCTCTGTGCACTTGAAGGGAAGTATCTGGTACAAGATAGTTGTTATGATTTGATTGACAGTGCTGATGCAGCCAATGGACATCATGAGCTTCAGCATCTCAGCTTCTCGTGTCATGTACCGAATGTGACTGGAAGAGGGTTTATTGAGGTGGTGGAAGATAATGGTCTTAGTAGCTGTTCCTTTCCATTCATAGTTGCAGAGCAAGAAATTTGTTCAGAGATCTGTAAGCTGGAGAATGTCATTGAGGCAGCAGAAACTGCTGATGACATCGTGATAAAAACTAAACTAATGGAAGAAAAGACTCGAGCATTGTATTTCATACAAGAAATGGGTTGGCTTCTTCATAGAAGTCGTGTGAAAGTTAGGCTAGGTCCCGTGGCACCTGTCCAAGATTGCTTCCATTTTAATCGGTTCATGTGGCTTGTTGGCTTCTCTATGGACCATGACTGGTGTGCTGTGATGAAAAAGCTCTTGAACATTATCTTTGAGGGCACTGTTGATACAGGAGATCATGCCTCTGTAGAGTTGGCATTGTTAGAGATGGGTCTTCTCCACAAAGCCGTAAAAAGAAATTGCCGGCCTATGGTGGAACTACTATTAAAATTTGTGCCAGTTAAGGCTTCAGATGGTGGAGACAGTAATGAGAAGCAAGTCAACAAGTCCTCTGACAAATTCTTATTCAGACCTGATACTGTTGGGCCTGCTGGGTTGACTCCCCTTCATGTTGCAGCAAGTTTGCATGGCTCAGAGAATGTGTTGGATGCCTTAACTGATGATCCAGGAATGGTGGGAACTGAGGCATGGAAAAGTGCTCGGGACACTACAGGTTTGACCCCCTATGACTATGCATCCCTGCGGGGCTACTACTCCTACATTCAGCTTGTCCAGAGGAAAACAAGCAACGCATGCAAAAGCCAACACGTGCTTGATATCCCAGGCACCCTTGTAGATACTAACATAAAGCAGAAGCAATCAGACGGGCATAGGTCATCGAAAGTTTCAAGTTTGCAGACTGAGAAGATTGAAACGACAGCAGCGCCACAACATTGTGGGCGATGCCAGCAAAAGCTAGCGTACGGTGGCGTGAGAAAGGCACTGGTTTACAGGCCAGTAATGCTGTCAATGGTGGCCATTGCAGCTGTGTGTGTCTGTGTGGCTTTGCTCTTCAAAAGCTCACCCAAAGTTTACTATGTGTTCCAGCCCTTCAGCTGGGAATCATTGGAGTATGGGTCAATCTAA 3102 0.4449 MEAQLEGKNQYLYGPVVPEMKSVGKRSLEWDLNDWKWDGDLFTARQLNSVPSDCRSRQLFPTDPEILATGDASNSLSSAYDYVNPGEGKRELEKRRRGVNDEGGVEMNDGAGSLNLNLGGQVYPIMEGEEKSGKKTKITASTSNRAVCQVEDCRTDLSNAKDYHRRHKVCDMHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKALPDATAVNGGSLNEEKGSSYLLMSLLRILSNMHSNGSDNMRNQDVLSHLLRNLASMAGTINGRNIASLLEGSQDLVKAGTSGAAQNVPNTNSNGPESSRPFGSSIKMDDGLIRQDPPESMVQRETTPSNDMAQKCIASGSDGGGSLKSPSVPQSSNALLSRDSLPPQSVAAETTVGRIGLSNIDLNNVYDDVQDYVENTRNSRPPLPSGNGSLDHPIWVQCDSLKSSPPQTSRNSDSTSTQSPSSSSGEAQSRTDRIVFKLFGKAPNDFPHALRSQILNWLSHSPTEIESYIRPGCIILTIYLRLENSTWEELCYNLGSSLRKLAASNDSFWRTGWIYTRVQHSVAFLYNGQVVLDVPLRLKSPQSCQILCVKPLAVSASASAQFIVKGFNLLMSNTRLLCALEGKYLVQDSCYDLIDSADAANGHHELQHLSFSCHVPNVTGRGFIEVVEDNGLSSCSFPFIVAEQEICSEICKLENVIEAAETADDIVIKTKLMEEKTRALYFIQEMGWLLHRSRVKVRLGPVAPVQDCFHFNRFMWLVGFSMDHDWCAVMKKLLNIIFEGTVDTGDHASVELALLEMGLLHKAVKRNCRPMVELLLKFVPVKASDGGDSNEKQVNKSSDKFLFRPDTVGPAGLTPLHVAASLHGSENVLDALTDDPGMVGTEAWKSARDTTGLTPYDYASLRGYYSYIQLVQRKTSNACKSQHVLDIPGTLVDTNIKQKQSDGHRSSKVSSLQTEKIETTAAPQHCGRCQQKLAYGGVRKALVYRPVMLSMVAIAAVCVCVALLFKSSPKVYYVFQPFSWESLEYGSI 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01864 1033 MobiDBLite consensus disorder prediction 303 322 - -
Pumo2g01864 1033 ProSiteProfiles Zinc finger SBP-type profile. 145 222 IPR004333 GO:0003677
Pumo2g01864 1033 MobiDBLite consensus disorder prediction 443 474 - -
Pumo2g01864 1033 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 111 919 IPR044817 GO:0003677
Pumo2g01864 1033 Gene3D - 791 932 IPR036770 -
Pumo2g01864 1033 MobiDBLite consensus disorder prediction 445 474 - -
Pumo2g01864 1033 Gene3D - 139 209 IPR036893 GO:0003677|GO:0005634
Pumo2g01864 1033 SUPERFAMILY SBT domain 146 226 IPR036893 GO:0003677|GO:0005634
Pumo2g01864 1033 Pfam SBP domain 148 221 IPR004333 GO:0003677
Pumo2g01864 1033 MobiDBLite consensus disorder prediction 365 389 - -
Pumo2g01864 1033 FunFam Squamosa promoter-binding-like protein 14 139 209 - -
Pumo2g01864 1033 MobiDBLite consensus disorder prediction 341 357 - -
Pumo2g01864 1033 MobiDBLite consensus disorder prediction 303 389 - -
Pumo2g01864 1033 SUPERFAMILY Ankyrin repeat 803 915 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01864 Pumo-Chr2 35605756 35616793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01864 1 1032 SBP-box Gene Family AT3G60030 48.042 0.0 830
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pumo2g01864 SBP 8.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01864 - - gmx:100776125 1905.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g01864 2 35605756 35616793 Pumo2g01864 2 35605756 35616793 ECH
Pumo4g00528 4 7005658 7011958 Pumo2g01864 2 35605756 35616793 PCT