Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01834 ATGGCTGCTGGTGTCACTGTCAAGTCCGAGGTTCTAGAATCTTCTCCTCTTCCTGTGGAGAAACCTGAGGGAGTTTGTTCCAACACAGAGGAAAACCACTTGGTTCAGACCAATATGTCTGATGGGTCATCCAATAAGTCAGTGCCAGCATCTGGACTTAATGCAGTGATTCCTGGTCCAAACCAGCTTACCATCTTCTATAATGGGAGTGTTTGTGTCTATGATGGAATCCCTGCAGAAAAGGTGCATGAAATAGTGCTTATTGCTGCTGCTGCCGCCAAGTCTACTGAAATGAAGAAGATTGGGTCCCAAACTACCCTCATTTCACCTGTTCCCTCAAGGCCTTCTTCTCCACATGGAATCACTAATAATATTGCTTCCTCGCAGAAGAGTTCCATCTGCAGGCTGCAAGCTGAATTTCCAATAGCACGCAGGCATTCACTTCAAAGGTTTCTTGAGAAGCGTCGGGACAGGCTTGGGAGCAAGGCACCTTATCCTTCCTCATCAACTACAAAAGTGGCCGACAACATAGAGAACAACTTCTGTGCTGACAATGCACCAGAACTGATTTCCTTGAATCGATCTGAGGAGGAATTTCAGCCAACTGTCTCTGCCTCTTGA 621 0.4654 MAAGVTVKSEVLESSPLPVEKPEGVCSNTEENHLVQTNMSDGSSNKSVPASGLNAVIPGPNQLTIFYNGSVCVYDGIPAEKVHEIVLIAAAAAKSTEMKKIGSQTTLISPVPSRPSSPHGITNNIASSQKSSICRLQAEFPIARRHSLQRFLEKRRDRLGSKAPYPSSSTTKVADNIENNFCADNAPELISLNRSEEEFQPTVSAS 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01834 206 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 40 174 IPR040390 -
Pumo2g01834 206 ProSiteProfiles Tify domain profile. 56 91 IPR010399 -
Pumo2g01834 206 Pfam tify domain 58 90 IPR010399 -
Pumo2g01834 206 SMART tify_2 56 91 IPR010399 -
Pumo2g01834 206 Pfam Jas motif 141 165 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01834 Pumo-Chr2 34362059 34365752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01834 60 172 Tify Gene Family AT5G20900 53.333 7.40e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Pumo2g01834 tify 3.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01834 K13464 - gmx:100306045 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00571 4 7529948 7533646 Pumo2g01834 2 34362059 34365752 PCT