Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01822 ATGGCTTCTTCTGATTCCGTTCCTTCTCACACCGTTGTCGGATACACACACACTGCCACTACTTCTCCACCAAACAGCCACCTATCGTCGCTATCACACGTCACTCTCGTAACCGTAACGGTCCTCGCCGTCGCCGTTACGGTTTCCTTAGCCTTATATTTTCTTCTCCGTCACCGTAACCGTTTCCTCCGTCGTGTCTCTCCGTCATCCGCTGCAGTGTTCTCCTCCGGCAATCGGATATCGCATGAAAGCGCTTCGTCTTCCGTTTTCGACTTACTCCCGACGTTCACCTTCTCCTCCGTCACGCGCCGCGCAGCCGCCGCCTCCGGCAGCGGCGGCGACTGCGCCGTGTGCCTGTCGAAGTTCGAGCAGCACGACCTTCTCCGCTTGCTACCTCTCTGCTGCCACGCTTTTCACGCGGAATGCATCGACACGTGGCTCCGGTCGAATCTCACGTGTCCGCTGTGCCGATCCGCCGTCGTCGCGTCGGAATCCGACCTCGCGAAGGTTTTCCGGTCGTCGTCCGTCGCCGGCGGCAACAGCTTCCGGCTGGAGATAGGGAACATCAGCAGCCGCCGCGGAGGAGCTACTTCCGCCGCCGCAGGAGGAGGCGGCGGAGAAACGCTCGGAAGGTCCTATTCCGTTGGCGCGTTCGAGTATTTCATCGACGAGGAGGCTGAGGTTGAGGTTGAGGTTGCGGTTGAGGTTGCGTTCGGTTATGCTGACCGGAGAAACGTTTCCGGCGAGAAAGACGACGGTGCTCCGGTGGAGGCTCCGGCGGATTCTCTGCCGAACTTAGCTGGTGAGGCAGGGCGCGGTGGAAGTAGCAGTAATAGTAATGGCTGGTTGAAGGATTACGTTGATCGTCTTTCGAATACGATGTCGTTTCGAAGTTCTGGAAGGTTCTTCACTGGGAGTAGTCGCAGAAGCGACGTCGTTTTGGGTGGAGATTACGATGTGGAAGCCAACCGTTTCGGGGATGAAATCGGTGAAATGTTTCGATGGCTCTCAGGGGTTTGA 1020 0.5784 MASSDSVPSHTVVGYTHTATTSPPNSHLSSLSHVTLVTVTVLAVAVTVSLALYFLLRHRNRFLRRVSPSSAAVFSSGNRISHESASSSVFDLLPTFTFSSVTRRAAAASGSGGDCAVCLSKFEQHDLLRLLPLCCHAFHAECIDTWLRSNLTCPLCRSAVVASESDLAKVFRSSSVAGGNSFRLEIGNISSRRGGATSAAAGGGGGETLGRSYSVGAFEYFIDEEAEVEVEVAVEVAFGYADRRNVSGEKDDGAPVEAPADSLPNLAGEAGRGGSSSNSNGWLKDYVDRLSNTMSFRSSGRFFTGSSRRSDVVLGGDYDVEANRFGDEIGEMFRWLSGV 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01822 339 CDD RING-H2_EL5-like 114 157 - -
Pumo2g01822 339 SMART ring_2 115 156 IPR001841 -
Pumo2g01822 339 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Pumo2g01822 339 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 28 233 - -
Pumo2g01822 339 Pfam Ring finger domain 114 157 IPR001841 -
Pumo2g01822 339 MobiDBLite consensus disorder prediction 247 278 - -
Pumo2g01822 339 SUPERFAMILY RING/U-box 111 162 - -
Pumo2g01822 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 162 IPR013083 -
Pumo2g01822 339 FunFam E3 ubiquitin-protein ligase ATL6 75 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01822 Pumo-Chr2 34085189 34086208 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01822 93 184 C3H Transcription Factor Family AT4G28890 51.087 6.65e-21 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01822 K10663 - gmx:100804962 404.831