Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01821 ATGGAGGAAAGAGGGCGTCATGGATTTAGCAACGGGAAGCTTTACCACGCAGAGGTTTTCGGCCCTAATTGTGAGCGGCATGAGAAATTGGTCAAGGTATTGATCAAACCTACGGCCGATGAACTCGGTCGAGCCCTTGAACAACTGCAGCCAGATTTTGTTTACCTGCAAGGCCAGCGGCTAGAAGATAGGGGAGAAATTGGGCCTCTTGTATGGGAAGATTTTGACCTGTCTGTCCCAGAAGCCTTGTGTGGATTGTTTTCTTCCAAATTACCTAATACTGTTTATTTGGAAACTCCTAAGGGAGAAAAATTGGCAGAGGCACTCCGTAATAAGGGAGTTCCATACACTATCTATTGGAAAAATGAATTTTCAAAGTTTGCAGCGTCACATTTTCGACATACTTTTTTCTCTGTGGCACAGAGTACATCCAGCCATACATGGGATGCTTTTCAGCTTGCTCTGGCATCTTTTAGACTATACTGTATACAAAACAATGTCTTACCTTCTAACAGCCATAAGGGTGCTGGAAAGCTTGGGCCACAAATTCTTGGGGTTCCTCCCAACATTGATGATGCTTGTTTGTTGGGGTCATTAGAGGATGGACTCAATGCTCTTCTATTTACAGAAGTAAGTTTGTTGCATGTGTTTACTTTGATTTCTTGTGCTCCACCACCACCTCTCCAGGCAGGAACATTCTCACGTGGTGTAGTGACTATGCGTTGCGATATATCCACATGTAGTTCTGCTCATATATCACTTTTGGTGTCTGGTAGTGCAGACACTTGTTTTAATGATCAGCTTTTGGAGAATCATATTAAAAAAGAGCTCATTGAGAAGAGTCAACTTGTCCAGGCACTTCCTAATCATGAACAAAGTAAAGCACCTTCCTCCGAGCCTCGAAGATCAGCCTCAGTAGCCTGTGGATCTAGTGTGTTTGAAGTTTGTATGCGAGTTCCTGCATGGGCTTCACAGGTTCTGAGACAGCTTGCACCCAATTTGTCATACCGCAGCTTTGTTATGTTGGGAATTGCTAGTATTCAGGGATTGCCAGTTGCATCTTTTAATAAAGATGATGCCGAACGCCTTCTTTTCTTTTGTACTAGGCAGGAGAAAGAAAACTGGCCTAATGATCATGTTTTATCTGGGATTCCAAGTTGGTTGAAGCCTCCACCACCCAGTCGAAAAAGATCTGAACCATGCTCTAGTTCAAAGTCTATTAATGCTAGTGGCCGAGGAATTGAAGCTATTGGCAGTCATAGACAGAAATTTAATCTTGCTGCTACGAGGCCAATCCCTCACTCTCATAGACACAAGATTCTCCCCTTTTCTGGATTGTCTGAGGGTGCAAGATATAATGGAGACCATGGAAAATCAAATCTACCACTTGCTCCTATTAAGCATAATGTTTCAGGCCCTACTTCAGTTACAAATAGGAAATCTGTGTCGAACTCATTTCAAGCTCACCAGATTATTTCTTTGAATCCACTACCTATGAAAAAGCATGGTTGTGACAGAGCTCCAATACGAGTTTGCTCAGAGGAGGAATTCCTGAGGGATGTAATGCAGTTTTTGATACTTCGGGGGCATAATCGTCTAATTCCGCCTGGTGGACTTGCTGAGTTCCCTGATGCCATTTTGAATGCGAAACGCCTTGACCTGTTCAACTTGTATAGGGAGGTGGTTTCAAGAGGAGGCTTTCATGTTGGAAATGGTATCAATTGGAAAGGTCAAGTTTTCTCAAAGATGCGCAATCACACTATGACAAATAGAATGACAGGTGTTGGCAATACACTCAAAAGACATTACGAAACTTATCTCTTAGAATACGAATTAGCTCACGATGACGTAGATGGAGAGTGCTGCTTGATGTGTCACAGTAGCGCAGCAGGCGACTGGGTGAACTGCGGTGTATGCGGTGAATGGGCTCATTTCGGCTGTGATAGGCGGCAGGGACTTGGAGCATTTAAGGACTATGCTAAAACCGATGGGCTCGAGTACGTGTGTCCTCGCTGCAGCGCGTTAAAATTCAGTAAAAAATCCCAGAAAACTGCAAATGGTTATTAA 2067 0.4359 MEERGRHGFSNGKLYHAEVFGPNCERHEKLVKVLIKPTADELGRALEQLQPDFVYLQGQRLEDRGEIGPLVWEDFDLSVPEALCGLFSSKLPNTVYLETPKGEKLAEALRNKGVPYTIYWKNEFSKFAASHFRHTFFSVAQSTSSHTWDAFQLALASFRLYCIQNNVLPSNSHKGAGKLGPQILGVPPNIDDACLLGSLEDGLNALLFTEVSLLHVFTLISCAPPPPLQAGTFSRGVVTMRCDISTCSSAHISLLVSGSADTCFNDQLLENHIKKELIEKSQLVQALPNHEQSKAPSSEPRRSASVACGSSVFEVCMRVPAWASQVLRQLAPNLSYRSFVMLGIASIQGLPVASFNKDDAERLLFFCTRQEKENWPNDHVLSGIPSWLKPPPPSRKRSEPCSSSKSINASGRGIEAIGSHRQKFNLAATRPIPHSHRHKILPFSGLSEGARYNGDHGKSNLPLAPIKHNVSGPTSVTNRKSVSNSFQAHQIISLNPLPMKKHGCDRAPIRVCSEEEFLRDVMQFLILRGHNRLIPPGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLMCHSSAAGDWVNCGVCGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPRCSALKFSKKSQKTANGY 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01821 688 ProSiteProfiles ARID domain profile. 511 615 IPR001606 GO:0003677
Pumo2g01821 688 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 615 678 IPR013083 -
Pumo2g01821 688 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 192 688 IPR042293 -
Pumo2g01821 688 MobiDBLite consensus disorder prediction 382 409 - -
Pumo2g01821 688 SUPERFAMILY FYVE/PHD zinc finger 614 677 IPR011011 -
Pumo2g01821 688 CDD PHD_ARID4_like 621 672 - -
Pumo2g01821 688 Gene3D - 509 614 IPR036431 GO:0003677
Pumo2g01821 688 SUPERFAMILY ARID-like 512 626 IPR036431 GO:0003677
Pumo2g01821 688 Pfam ARID/BRIGHT DNA binding domain 514 611 IPR001606 GO:0003677
Pumo2g01821 688 SMART ARID_2 508 611 - -
Pumo2g01821 688 CDD ARID 513 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01821 Pumo-Chr2 34052686 34061964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01821 32 687 ARID Transcription Factor Family AT3G43240 64.765 0.0 894
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pumo2g01821 ARID 6.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01821 - - gmx:100808357 1238.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g01821 2 34052686 34061964 Pumo2g01821 2 34052686 34061964 ECH