Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01820 ATGTTGAATCCTGAACCGTCACCGCCGCCGATGATGGTTCCGCCGGCGACACCGCTGAACCGTGAAACGACGTCGCTGAGGAAGAACCGCAGAACGAGAACTCCCGCTCCTGTTCCGCCTTTCGCGGAAGTGGTTGACGTGGACTCCTCTTTCTTCACGCCGATCTCCTTCAGAGGCGCGACCAAGTCAAACGCGATCGCCGTGGAGCAATACGACGGCGTTTCGAGTTCCAACACCGTTCACGTCATCGACCTCTCCGACACGGAGGACGACGACGACGTTCGCATCCTCAAGTTCTCTCCCGCTAACACTTCCTTCGGAAAACGCAAAAAGGCGAAGGGAGAGTGCTCTTATACCGCCCCCTTCGTCTGCGAAATCTGCACCGAAACCAAAACCGCGAGGGACTCCTTCTCCATCAGCGGATGCTGCCACGTGTACTGCAACGACTGCGTTTCGCAGTACGTTGCATCGAAGCTCGACGAGAACGTGGTGAACATCGGGTGCCCTGTGCCGGGATGCAGGGGATTACTGGAGGCCGAAGATTGCCGTGAAATTCTCGCGCCTCAAATTTTCGATCGGTGGGGAAAAGCTTTATGCGAGGCTGTGATTTCTGCTGAAGAAAAGTTCTATTGTCCCTTCGCGGATTGCTCTGCGATGCTGATACGAGGGATTGAAGATAATATTAGGGAGTGTGAGTGTCCGAATTGTAGGAGGCTGTTCTGTGCGCTGTGTAGGGTGCCCTGGCACGAGAACATACCGTGTGAGGAGTTTCAGAAACTGAACGCGGACGAGAGGGAGAGGGAAGATATCATGCTGATGAACCTCGCGAAGCAAATGAAGTGGAGGAGGTGCCCCAAGTGTAGGTTTTACGTCGCCAAATCTGATGGCTGCATGTACATGAAATGCAGGTGTGGAAACGCCTTCTGTTACAACTGTGGATCTCCCAACGTAAATGCCTCCCATTATTGCAACTACTGCAGACGCTAG 987 0.54 MLNPEPSPPPMMVPPATPLNRETTSLRKNRRTRTPAPVPPFAEVVDVDSSFFTPISFRGATKSNAIAVEQYDGVSSSNTVHVIDLSDTEDDDDVRILKFSPANTSFGKRKKAKGECSYTAPFVCEICTETKTARDSFSISGCCHVYCNDCVSQYVASKLDENVVNIGCPVPGCRGLLEAEDCREILAPQIFDRWGKALCEAVISAEEKFYCPFADCSAMLIRGIEDNIRECECPNCRRLFCALCRVPWHENIPCEEFQKLNADEREREDIMLMNLAKQMKWRRCPKCRFYVAKSDGCMYMKCRCGNAFCYNCGSPNVNASHYCNYCRR 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01820 328 MobiDBLite consensus disorder prediction 1 37 - -
Pumo2g01820 328 ProSiteProfiles Zinc finger RING-type profile. 124 170 IPR001841 -
Pumo2g01820 328 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 73 325 IPR031127 GO:0004842|GO:0016567
Pumo2g01820 328 ProSitePatterns Zinc finger RING-type signature. 142 151 IPR017907 -
Pumo2g01820 328 ProSiteProfiles TRIAD supradomain profile. 120 328 IPR044066 -
Pumo2g01820 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 205 IPR013083 -
Pumo2g01820 328 SUPERFAMILY RING/U-box 265 325 - -
Pumo2g01820 328 MobiDBLite consensus disorder prediction 1 16 - -
Pumo2g01820 328 SUPERFAMILY RING/U-box 121 203 - -
Pumo2g01820 328 CDD Rcat_RBR_unk 280 316 - -
Pumo2g01820 328 FunFam RBR-type E3 ubiquitin transferase 119 206 - -
Pumo2g01820 328 Pfam IBR domain, a half RING-finger domain 275 316 IPR002867 GO:0008270
Pumo2g01820 328 Pfam IBR domain, a half RING-finger domain 198 254 IPR002867 GO:0008270
Pumo2g01820 328 SUPERFAMILY RING/U-box 198 259 - -
Pumo2g01820 328 SMART ibrneu5 192 254 IPR002867 GO:0008270
Pumo2g01820 328 SMART ibrneu5 264 326 IPR002867 GO:0008270
Pumo2g01820 328 FunFam RBR-type E3 ubiquitin transferase 256 328 - -
Pumo2g01820 328 Gene3D - 251 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01820 Pumo-Chr2 34046812 34049552 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01820 48 315 C3H Transcription Factor Family AT2G19610 28.214 7.75e-26 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01820 K11975 - gmx:100803898 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g01820 2 34046812 34049552 Pumo2g01820 2 34046812 34049552 ECH