Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo2g01819 | ATGGGCAACCACCTTTGTGTCATTGTGAAGACTAAAAGAAAAGCCACCACCACAAAGCCCACTCCACCGTCATCCACTTTGAACCTAGAAACCATCTTGGAAAACTACGTTCCCCCACATAACATAAACCTTGCCCCACTTTACACCTGCGAATTTTGCTGCGAATCAAGGCCAATATATGACTCCTTCAGCCCCGAAGGTTGCTGCCACTTCTACTGCACCAAATGCACCCTCAAATACATAGTTTCAAAGCTCCAAAACAACGTGTTGAACCTTAATTGCCCCGAGTCGGGGTGCAATGGAGAGTTGAGTCCTCATTTCTGCAAACAGATTCTACCAAACTTTGTGTTCATGTGGTGGGAGAGGGCACTGTGCGAGTCGGTGATTCCTGAGAAGGACAAGTTTTATTGTCCCTTCCATGATTGCTCGGCGCTGTTGTTGTGCTGTGAGCCACCACGCAAGAAGGGTGCGGTCGTTAGAGCCTCGAACTGCCCCCATTGCAAGAGGAACGTTTGCGTTCAGTGTAGGGCGCCTTGGCACGCCGAAATTAGTTGCGAGAAGTTTCAGAAGTTGAAGAACAAGAACGACGATCTGATGATGGATCTTGCCAAGAGAAAAAAGTGGAGACGGTGCCCTAACTGCAAGCATTATGTTGAGAAGAAGCAAGGCTGCGATGACATGACATGCAGGTGTTTTCATAGATTTTGTTACAACTGTGGAGCTAGCATATACAATGGTGTTGGCCCTGATTGTTTTGAACTTGATGATTAA | 771 | 0.4708 | MGNHLCVIVKTKRKATTTKPTPPSSTLNLETILENYVPPHNINLAPLYTCEFCCESRPIYDSFSPEGCCHFYCTKCTLKYIVSKLQNNVLNLNCPESGCNGELSPHFCKQILPNFVFMWWERALCESVIPEKDKFYCPFHDCSALLLCCEPPRKKGAVVRASNCPHCKRNVCVQCRAPWHAEISCEKFQKLKNKNDDLMMDLAKRKKWRRCPNCKHYVEKKQGCDDMTCRCFHRFCYNCGASIYNGVGPDCFELDD | 256 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo2g01819 | 256 | SUPERFAMILY | RING/U-box | 194 | 251 | - | - | |
Pumo2g01819 | 256 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 46 | 131 | IPR013083 | - | |
Pumo2g01819 | 256 | ProSiteProfiles | TRIAD supradomain profile. | 46 | 256 | IPR044066 | - | |
Pumo2g01819 | 256 | SUPERFAMILY | RING/U-box | 47 | 131 | - | - | |
Pumo2g01819 | 256 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 26 | 242 | IPR031127 | GO:0004842|GO:0016567 | |
Pumo2g01819 | 256 | Gene3D | - | 183 | 253 | - | - | |
Pumo2g01819 | 256 | FunFam | RBR-type E3 ubiquitin transferase | 46 | 131 | - | - | |
Pumo2g01819 | 256 | Pfam | IBR domain, a half RING-finger domain | 187 | 243 | IPR002867 | GO:0008270 | |
Pumo2g01819 | 256 | Pfam | IBR domain, a half RING-finger domain | 126 | 185 | IPR002867 | GO:0008270 | |
Pumo2g01819 | 256 | CDD | Rcat_RBR_unk | 207 | 243 | - | - | |
Pumo2g01819 | 256 | SMART | ibrneu5 | 117 | 185 | IPR002867 | GO:0008270 | |
Pumo2g01819 | 256 | SMART | ibrneu5 | 186 | 251 | IPR002867 | GO:0008270 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo2g01819 | Pumo-Chr2 | 34020710 | 34022739 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo2g01819 | 61 | 241 | C3H Transcription Factor Family | AT2G19610 | 31.746 | 4.54e-22 | 92.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo2g01819 | K11975 | - | rcu:8259039 | 252.292 |