Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01802 ATGAGGGCAATGGCACCAACAGTGATGTTTTTGCTTCATGCTCCTTCTCCAGCCTTGGTCTTGATTCCAATTTATGTGACCAACTTCGTGGTATTCTTCTTTTTTTTGTTATTTATTTTTGGTTGGTTTATTGAGAGTGTGAAACATTTAATTTTTAATTTTTGTTTGTTTACAGAGAGGTTGGGATTTGAAGTTCCGACGCAGGTGCAAGCTCAAGCAATCCCTGTTATTCTCTCGGGGCGTCATGCACTGGTAAATGCTGCAACGGGCACGGGGAAGACTGTTGCGTATTTGGCCCCGATTATTCATCACTTGCAGGGTTATGAAAATCGGATTCAGCGCTCTGATGGAACATTTGCGTTGGTTCTTGTACCGACGCGGGAGCTATGTTTGCAGGTTTATGAAATTCTTCAAAAGTTATTGCATCGGTTTCATTGGATTGTTCCAGGATACATTATGGGTAGTGAAAATAGATCAAAGGAGAAAGCTAGGCTGCGCAAAGGCATATCAATTCTTATAGCAACTCCTGGGCGCCTTTTAGATCACTTGAAGAACACAACATCATTCTTGTACTCAAATCTACGCTGGATAATTTTTGATGAAGCTGATCGGATTTTGGAATTAGGATTCGGAAAAGATATAGAGGAAATACTAGATCTTTTAGGTTCAAGGAAAACAGGGCATGATGATCAAGAGAATACAGTTCCAACACACTCTAAAATTCAAAGACAGAATTTGCTTTTATCTGCCACCTTAAATGAGAAAGTGAACCACCTTGCTAAAATGAGTCTAGACAATCCAGTTATGATCGGTCTTGATGGTAAGAAAATAGAACCAATTTCAACAATTAAAAGGCTTGATCCTTCAGAATCTGATGAAGACAATGAAGATACGTATTCCAGTAAAGTACCAACAGTTGGAGATTACAAAGTCCCCGTACAGTTGATTCAGAGATACATGAAAGTGCCTTGTGGTTCACGGCTTCCTGTACTTCTTTCAATTCTAAAGCATCTCTTTGAAAGGGATCCTTCACAAAAGGTTGTTGTATTCTTTTCAACATGTGATGCAGTAGACTTTCACTATTCACTGTTAAGTGAATTTCAATTTTCATCCTATCCACAAACAGAAGGGGTCCGACAGTTGTTTCTTGGATGCAAAACTTTCCGGTTACATGGTAATATGGAACAAGAGGACCGGAGAACCAGTTTTCAGGCCTTTAAAACTGAGAAATCTGCTTTGTTTTTGTCCACTGATGTTTCTGCTAGAGGATTGGATTTTCCAAAGGTTAGGTGCATCATACAATATGATTCTCCTGGGGAAGCTACTGAATATGTTCATAGAGTTGGTAGAACTGCTCGATTGGGTGAAAGAGGAGAGTCATTATTATTTCTGCAACCAGTTGAAATAGACTATTTACAGGACTTGGAGAAACATGGTGTCTCACTCACGGAGTATCCTGTCCTCAAAATGTTGGATAATTTTCCACTATATGGACAAAAGAACCACACAAAGAAGTCTGTTTTCTTAGAGTCACATCCCTGGGTCCTTTGTCTCCAGAAGGCACTTGAAGCCTTCATCATGTCCAAGCCCAAGATAGATGAACTTGCCAAGAAGGCATTTTGCTCTTGGGTTCGTGCATACACAGCCCATCGTGGTGAGCTGAAAAGAATATTTATGATCAAGAAACTTCACTTGGGGCACGTGGCAAAAAGCTTTGCATTAAAACAACAACCCTCCTTAGTTGGACAGTCATTCCAAAAGCAAACTAAGAAGAGAAAGAGATTTGAGAAGAAAAATGGGTTGTCAAAAAAGAGAAAAGTTGTGAGTGTGTGA 1833 0.3977 MRAMAPTVMFLLHAPSPALVLIPIYVTNFVVFFFFLLFIFGWFIESVKHLIFNFCLFTERLGFEVPTQVQAQAIPVILSGRHALVNAATGTGKTVAYLAPIIHHLQGYENRIQRSDGTFALVLVPTRELCLQVYEILQKLLHRFHWIVPGYIMGSENRSKEKARLRKGISILIATPGRLLDHLKNTTSFLYSNLRWIIFDEADRILELGFGKDIEEILDLLGSRKTGHDDQENTVPTHSKIQRQNLLLSATLNEKVNHLAKMSLDNPVMIGLDGKKIEPISTIKRLDPSESDEDNEDTYSSKVPTVGDYKVPVQLIQRYMKVPCGSRLPVLLSILKHLFERDPSQKVVVFFSTCDAVDFHYSLLSEFQFSSYPQTEGVRQLFLGCKTFRLHGNMEQEDRRTSFQAFKTEKSALFLSTDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPVEIDYLQDLEKHGVSLTEYPVLKMLDNFPLYGQKNHTKKSVFLESHPWVLCLQKALEAFIMSKPKIDELAKKAFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGQSFQKQTKKRKRFEKKNGLSKKRKVVSV 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01802 610 CDD DEADc_DDX31 47 271 - -
Pumo2g01802 610 SMART DUF4217_3 517 582 IPR025313 -
Pumo2g01802 610 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 74 270 IPR014001 -
Pumo2g01802 610 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 198 206 IPR000629 -
Pumo2g01802 610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 476 IPR027417 -
Pumo2g01802 610 MobiDBLite consensus disorder prediction 283 303 - -
Pumo2g01802 610 Pfam Domain of unknown function (DUF4217) 519 579 IPR025313 -
Pumo2g01802 610 SMART ultradead3 62 283 IPR014001 -
Pumo2g01802 610 Gene3D - 53 273 IPR027417 -
Pumo2g01802 610 MobiDBLite consensus disorder prediction 283 299 - -
Pumo2g01802 610 Gene3D - 326 607 IPR027417 -
Pumo2g01802 610 SMART helicmild6 358 455 IPR001650 -
Pumo2g01802 610 Pfam DEAD/DEAH box helicase 67 258 IPR011545 GO:0003676|GO:0005524
Pumo2g01802 610 Pfam Helicase conserved C-terminal domain 333 455 IPR001650 -
Pumo2g01802 610 CDD SF2_C_DEAD 315 464 - -
Pumo2g01802 610 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 330 502 IPR001650 -
Pumo2g01802 610 PANTHER RNA HELICASE 59 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01802 Pumo-Chr2 33678971 33686058 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01802 62 464 Eukaryotic Initiation Factors Gene Family AT5G11200 27.506 8.54e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01802 K14806 - gmx:100805157 1030.39