Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01801 ATGAAGGCTCCTCCCAATGGTTACTTGCCTAATTCTGGCGAAGGGGAAAGGAAGACCATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCACTGGTTTCTTTACCTCCTGTTGGAAGTCTCGTGGTTTACTTCCCTCAAGGACACAGTGAGCAAGTTGCAGCATCCATGCAAAAGGAGGCTGACTTCATACCTAGTTATCCTAACCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGCCCTTCACGCTGATCCTGAAACTGACGAGGTCTATGCACAGATGACCCTTCAACCTGTAAATAAATATGACAAGGAAGCAATATTGGCATCAGACATGGGTCTCAAACAAAACCTACAACCTACTGAGTTCTTTTGCAAAACTCTTACAGCTAGTGACACAAGCACTCATGGTGGTTTTTCTGTGCCTCGTAGAGCTGCTGAGAAAATATTCCCACCTCTGGATTTTTCAATGCAACCTCCAGCCCAGGAGATTGTAGCCAAAGATTTGCATGACAATACATGGACATTTAGACATATTTATCGCGGACAACCAAAGAGGCATCTATTGACTACTGGTTGGAGTGTCTTTGTTAGCACAAAAAGGCTGTTTGCTGGAGATTCAGTTCTATTTATCAGAGATGAAAAACAACAACTTCTTTTAGGTATTAAGAGGGCTAATAGGCAGCAACCACCACTATCTTCATCAGTAATTTCCAGTGACAGCATGCATATTGGCATCCTTGCTGCTGCAGCTCATGCTGCTTCAAATAATAGCCCATTTACTATATTTTATAATCCAAGGGCCAGCCCTTCTGAATTTGTAATTCCATTGGCCAAGTATAATAAGGCCCTGTACAATCAAGTTTCCCTTGGAATGAGATTCAGAATGATGTTTGAGACTGAGGAGTCTGGGGTACGCAGATATATGGGTACAATCACAGGGATCAGTGACTTGGATCCTGTCCGATGGAAGAGTTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGCCCGAGCAGGGTTTCAATTTGGGATATTGAACCAGTAGTGACTCCTTTCTACATTTGTCCTCCTCCATTTTTTAGGCCCAAGTTCCCCAAGCAGCCAGGAATGCCAGATGATGAGTCTGATATAGAAAATGCTTTCAAGAGAGCTATGCCTTGGCTTGGAGATGACCTTGGCATGAAGGATGCCTCAAGTTCAGTCTTCCCTGGTTTTAGTTTGATGCAATGGATGAGCATGCAGCAGAATAATCAGTTCTCTGCTGCCCAATCTGGATTTATACCCCCATCCATGCTTTCATCCAATACAATGCATGGTAACCTTACCACTGATGATCCATCCAAATTATTGAGCTTTCAAGCTCCTGTCCTCTCTGCACCAAATCTTCAATTTAACAAACCTAATTTACCAAACCAAGTCAACCAATTGCAACAATCCCCAACATCATGGCCTCCACAGCAGCAGCAACAGCAGAAGCTGCAGTCATTGTTGCAAACACCCTTAAACCCGCTCCAGCAGCAGCAACAGCTGCCTGTACCACAAAACCTATCACAACCACAGCAACAACAAACCCAAATGCCTCAACAGAGAGCACAACAGCCACAACAACAGCAACAGCAGCAGCAGTCGTGTCAACAAACCATCATGAATAACGGGGCGGTTGCTTCTAACCAGATTCCGAATCAGTGTGTACAGCAACCAGTAACATACTCACAGCTTCAGCAACAGCAATTACTCTCAGGAAGTATCCCACCCCAACAAAGTTTTCAATCGCCCAATAAGAATACATTGCTGATGACATCCTTATCACAAGACTCACAGTTTCAGCAACAAATAGACCAGCAAGCTAGTCTCTTGCAGAGGCCGCAGCAACAGACACAGTTGCAATCATCTCCATTGCAGTTATTGCAACAAAGCTTGTCACAGAGGGCACCACAGCAACCACAAATCACTCAAATGTCACAGCAAAACAGCTCAGAGCAACAACCACAGTTACAGTTGCTACAGAAATTGCAGCAGCAACAACAGCAGCAGCAGCAACAGCAACTCCTTTCCACTTCTAGCCCACTTTTGCAGTCTCAGCTTCTACAGCAACAAAATACTCATCAACAAAACCAGCAATCGCCACAGCTGCCTCTATCACAGGGTCATCAACCTCAACAGCTTGGCAACAATTCTTTCTCAATGGAGAAGCTTCTCAGTGGCAACAACTACTCATCTTCATCTCTGATGCAAACACAGCAGCTTTCTGTGAACCAACCCCATAATACACAGAAATCTCTAACTAATACTAGAGCTCCCTCTACTCTTACAGATGGAGATGCCCCATCATGCTCAACCTCACCATCTACTAATAACTGCCAGATATCACCTCCAAACTTGATGAAAAGAAATCAACAAGTACCAGCCACATTAGGAGGACCTTCAGTAGTTGAACCCCCCAATCATCTGATGCAGGAGCTTCATAGCAAGTCTGAGATGCAGATCAAACATGAATTACCCAGTGTAAGAGGACCTGACCAGCTCAAGTACAAAGGGACAATTGCTGATCAGCTGGAAGCTTCTTCTGGAACATCTTACTGTATTGATCCTAATAATATCCACCAGAACTTTCAACTTCCCAACTTCTGCATGGATGGGGATGTCCAATCACACCCAAGAAATAATCTTCCATTTGCCTCTAATCTTGATGGATTAACTCCTGATACTTTACTAACAAGAGGGTATGATTCTCAAAAAGATTTTCAAAACTTGCTGTCCAATTATGGTGGTGCTCCAAGAGACATTGAAACTGAGCTGTCCACTGCTGCCATTAGTTCACAGCCATTTGGGGTGCCAGACATGCCTTTTAAGCCTGGATGCTCTAGTGATATTGCCATCAATGATCCTGGGGTTTTGAATAATGGCTTGTGGGCTAATCAGACTCAACGAATGCGAACATATACTAAGGTTCAAAAATGTGGCTCTGTTGGAAGATGTATTGATGTCACCCGTTACAAGGGATATGACGAACTCCGGAATGATTTGGCTCGGATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCAAAGGACTGAGTGGAAACTAGTATATGTGGATCATGAAAATGACATTCTTCTTGTTGGCGATGACCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTGTCATCTGCTGAGGTACAGCAAATGAGCTTGGATGGGGATTTAGGTCATGTTCCAGTCCCCAATCAAGCTTGTAGTGGGACAGATAATGGCAATGCATGGAGGGGACAGTATGATGATAACTCTGCAGCCTCATTTAATCGATAA 3348 0.4409 MKAPPNGYLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAILASDMGLKQNLQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRANRQQPPLSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPSEFVIPLAKYNKALYNQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKSSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWLGDDLGMKDASSSVFPGFSLMQWMSMQQNNQFSAAQSGFIPPSMLSSNTMHGNLTTDDPSKLLSFQAPVLSAPNLQFNKPNLPNQVNQLQQSPTSWPPQQQQQQKLQSLLQTPLNPLQQQQQLPVPQNLSQPQQQQTQMPQQRAQQPQQQQQQQQSCQQTIMNNGAVASNQIPNQCVQQPVTYSQLQQQQLLSGSIPPQQSFQSPNKNTLLMTSLSQDSQFQQQIDQQASLLQRPQQQTQLQSSPLQLLQQSLSQRAPQQPQITQMSQQNSSEQQPQLQLLQKLQQQQQQQQQQQLLSTSSPLLQSQLLQQQNTHQQNQQSPQLPLSQGHQPQQLGNNSFSMEKLLSGNNYSSSSLMQTQQLSVNQPHNTQKSLTNTRAPSTLTDGDAPSCSTSPSTNNCQISPPNLMKRNQQVPATLGGPSVVEPPNHLMQELHSKSEMQIKHELPSVRGPDQLKYKGTIADQLEASSGTSYCIDPNNIHQNFQLPNFCMDGDVQSHPRNNLPFASNLDGLTPDTLLTRGYDSQKDFQNLLSNYGGAPRDIETELSTAAISSQPFGVPDMPFKPGCSSDIAINDPGVLNNGLWANQTQRMRTYTKVQKCGSVGRCIDVTRYKGYDELRNDLARMFGIEGQLEDPQRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGHVPVPNQACSGTDNGNAWRGQYDDNSAASFNR 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01801 1115 MobiDBLite consensus disorder prediction 470 503 - -
Pumo2g01801 1115 MobiDBLite consensus disorder prediction 516 547 - -
Pumo2g01801 1115 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pumo2g01801 1115 Gene3D - 983 1077 - -
Pumo2g01801 1115 FunFam Auxin response factor 289 361 - -
Pumo2g01801 1115 MobiDBLite consensus disorder prediction 1093 1115 - -
Pumo2g01801 1115 SUPERFAMILY CAD & PB1 domains 1002 1066 - -
Pumo2g01801 1115 MobiDBLite consensus disorder prediction 705 814 - -
Pumo2g01801 1115 ProSiteProfiles PB1 domain profile. 988 1081 IPR000270 GO:0005515
Pumo2g01801 1115 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Pumo2g01801 1115 MobiDBLite consensus disorder prediction 647 676 - -
Pumo2g01801 1115 CDD B3_DNA 125 217 IPR003340 GO:0003677
Pumo2g01801 1115 SMART B3_2 126 228 IPR003340 GO:0003677
Pumo2g01801 1115 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Pumo2g01801 1115 FunFam Auxin response factor 124 228 - -
Pumo2g01801 1115 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Pumo2g01801 1115 Gene3D - 289 360 - -
Pumo2g01801 1115 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 1077 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pumo2g01801 1115 FunFam Auxin response factor 983 1077 - -
Pumo2g01801 1115 Pfam AUX/IAA family 985 1074 IPR033389 -
Pumo2g01801 1115 Gene3D - 123 227 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01801 Pumo-Chr2 33628805 33637530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01801 1 488 B3 DNA Binding Superfamily AT1G19220 82.992 0.0 838
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pumo2g01801 AUX_IAA 2.4e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01801 K14486 - gmx:100815277 972.615