Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01750 ATGAAAAAGCATGGTTGTGACAGAGCTCCAATACGAGTTTGCTCAGAGGAGGAATTCCTGAGGGATGTAATGCAGTTTTTGATACTTCGGGGGCATAATCGTCTAATTCCGCCTGGTGGACTTGCTGAGTTCCCTGATGCCATTTTGAATGCGAAACGCCTTGACCTGTTCAACTTGTATAGGGAGGTGGTTTCAAGAGGAGGCTTTCATGTTGGAAATGGTATCAATTGGAAAGGTCAAGTTTTCTCAAAGATGCGCAATCACACTATGACAAATAGAATGACAGGTGTTGGCAATACACTCAAAAGACATTACGAAACGTATCTCTTAGAATACGAATTAGCTCACGATGACGTAGATGGAGAGTGCTGCTTGATGTGTCACAGTAGCGCAGCAGGCGACTGGGTGAACTGCGGTGTATGCGGTGAATGGGCTCATTTCGGCTGTGATAGGCGGCAGGGACTTGGAGCATTCAAGGACTATGCTAAAACCGATGGGCTCGAGTACGTGTGTCCTCGCTGCAGCGCGTTAAAATTCAGTAAAAAATCCCAGAAAACTGCAAATGGTTATTAA 573 0.4555 MKKHGCDRAPIRVCSEEEFLRDVMQFLILRGHNRLIPPGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLMCHSSAAGDWVNCGVCGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPRCSALKFSKKSQKTANGY 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01750 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 177 IPR013083 -
Pumo2g01750 190 SMART ARID_2 10 113 - -
Pumo2g01750 190 SUPERFAMILY ARID-like 14 128 IPR036431 GO:0003677
Pumo2g01750 190 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 1 190 IPR042293 -
Pumo2g01750 190 SUPERFAMILY FYVE/PHD zinc finger 116 180 IPR011011 -
Pumo2g01750 190 CDD ARID 15 113 - -
Pumo2g01750 190 CDD PHD_ARID4_like 123 174 - -
Pumo2g01750 190 Gene3D - 14 119 IPR036431 GO:0003677
Pumo2g01750 190 Pfam ARID/BRIGHT DNA binding domain 16 113 IPR001606 GO:0003677
Pumo2g01750 190 ProSiteProfiles ARID domain profile. 13 117 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01750 Pumo-Chr2 32852841 32855382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01750 1 189 ARID Transcription Factor Family AT3G43240 86.772 1.34e-122 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pumo2g01750 ARID 5.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01750 - - gmx:100775894 406.371