Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01749 ATGGCAACTCCTCGCAACAGGAAGGGTCCTACTTTGGTTCGTCGGTGGGTTTGGGGTCATTGGTGGCGCACAGTGGTCGTGGTGCATAGCGGCAGATCTGGGTCCTGTGCTGTCGACGGTGGTCGTGGCGCGGCACAACGCGATGGATCTGGGTTCATGGAGAGTCAATCATCATCACTGAACTATCAACCTCGGAAACCGAAACGGTTCCAAATGTTGAATCCTGAACCGTCGCCGCCGCCGCCGATGATGGTTCCGCCGGCGACACCGCTGAACCGCGAAACGACGTCGCTCAGGAAGAACCGCAGAACGAGAACTCCCGCTCCCGTTCCGCCTTTCGCGGAAGTGGTTGACGTGGACTCCTCTTTCTTCACGCCGATCTCCTTCAGAGGCGCGACCAAGTCAAACGCGATCGCCGTGGAGCAATACGACGGTGTTTCGAGTTCCAACACCGTCCACGTCATCAACCTCTCCGACACGGAGGATGACGACGACGTTCGCATCCTCAAGTTCTCTCCCGCCAACACTTCCTTCGGAAGACGCAAAAAGGCGAAGGGAGAGTGCTCCTATACCGCCCCCTTCGTCTGCGAAATCTGCACCGAAACCAAAACCGCGAGGGACTCCTTCTCCATCAGCGGATGCTGCCACGTGTACTGCAACGACTGCGTTTCGCAGTACGTCGAGTCAAAGCTCGACGAGAACGTGGTCAACATCGGGTGCCCTGTGCCGGGATGCAGGGGATTACTGGAGGCCGAAGATTGCCGTGAAATTCTCGCGCCTCAAATTTTCGATCGGTGGGGAAAAGCTTTATGCGAGGCTGTGATTTCTGCTGAAGAAAAGTTCTATTGTCCCTTCGCGGATTGCTCTGCGATGCTGATTCGAGGGACTGAAGATAATATTAGGGAATGTGAGTGTCCGAATTGTAGGAGGCTGTTCTGTGCGCTGTGTAGCGTGCCCTGGCACGAGAACATACCGTGCGAGGAGTTTCAGAAACTGAACGCGGACGAGAGGGAGAGGGAAGATATCATGCTGATGAACCTCGCGAAGCAAATGAAGTGGAGGAGGTGGCCCAAGTGTAGGTTTTACGTCGCCAAATCGATGGCTGCATGTACATGA 1116 0.5556 MATPRNRKGPTLVRRWVWGHWWRTVVVVHSGRSGSCAVDGGRGAAQRDGSGFMESQSSSLNYQPRKPKRFQMLNPEPSPPPPMMVPPATPLNRETTSLRKNRRTRTPAPVPPFAEVVDVDSSFFTPISFRGATKSNAIAVEQYDGVSSSNTVHVINLSDTEDDDDVRILKFSPANTSFGRRKKAKGECSYTAPFVCEICTETKTARDSFSISGCCHVYCNDCVSQYVESKLDENVVNIGCPVPGCRGLLEAEDCREILAPQIFDRWGKALCEAVISAEEKFYCPFADCSAMLIRGTEDNIRECECPNCRRLFCALCSVPWHENIPCEEFQKLNADEREREDIMLMNLAKQMKWRRWPKCRFYVAKSMAACT 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01749 371 SMART ibrneu5 264 326 IPR002867 GO:0008270
Pumo2g01749 371 ProSiteProfiles TRIAD supradomain profile. 192 371 IPR044066 -
Pumo2g01749 371 CDD BRcat_RBR_unk 279 329 - -
Pumo2g01749 371 SUPERFAMILY RING/U-box 193 275 - -
Pumo2g01749 371 ProSiteProfiles Zinc finger RING-type profile. 196 242 IPR001841 -
Pumo2g01749 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 279 IPR013083 -
Pumo2g01749 371 SUPERFAMILY RING/U-box 270 331 - -
Pumo2g01749 371 MobiDBLite consensus disorder prediction 73 88 - -
Pumo2g01749 371 FunFam RBR-type E3 ubiquitin transferase 191 277 - -
Pumo2g01749 371 MobiDBLite consensus disorder prediction 50 65 - -
Pumo2g01749 371 Pfam IBR domain, a half RING-finger domain 270 326 IPR002867 GO:0008270
Pumo2g01749 371 ProSitePatterns Zinc finger RING-type signature. 214 223 IPR017907 -
Pumo2g01749 371 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 106 366 IPR031127 GO:0004842|GO:0016567
Pumo2g01749 371 MobiDBLite consensus disorder prediction 33 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01749 Pumo-Chr2 32841636 32843672 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01749 120 363 C3H Transcription Factor Family AT2G19610 25.490 5.29e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01749 K11975 - gmx:100803898 493.426