Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01748 ATGGGCAACCACCTTTGTGTCATTGTGAAGACTAAAAGAAAAGCCACCACCACAAATCCCACTCCACCATCATCCACTTTGAACCTAGAAACCATCTTGGAAAACTACGTTCCCCCACATAACATAAACCTTGCCCCACTTTACACCTGCGAATTTTGCTGCGAATCAAGGCCAATATATGACTCCTTCAGCCCCGAAGGTTGTTGCCACTTCTACTGCACCAAATGCACCCTCAAATACATAGTTTCAAAGCTCCAAAACAACGTGTTGAACCTTAATTGCCCCGAGTCGGGGTGCAATGGAGAGTTGAGTCCTCATTTCTGCAAACAGATTCTACCAAACTTTGTGTTCATGTGGTGGGAGAGGGCGCTGTGCGAGTCCGTGATTCCTGAGAAGGACAAGTTTTATTGTCCCTTCCATGATTGCTCGGCGCTGTTGTTGTGCTGTGAGCCACCACGCAAGAAGGGTGCGGTCGTTAGAGCCTCGAACTGCCCCCATTGCAAGAGGAACGTTTGCGTTCAGTGTCGGGCGCCTTGGCACGCCGAGATTAGTTGCGAGAAGTTTCAGAAGTTGAAGAACAAGAACGACGATCTGATGCTGGATCTTGCCAAGAGAAAAAAGTGGAGACGGTGCCCTAATTGCAAGCATTATGTTGAGAAGAAGCAAGGCTGCGATGACATGACATGCAGGTGTTTTCATAGATTTTGTTACAACTGTGGAGCTAGCATATACAATGGTGTTGGCCATGATTGTTTTGAACTTGATGATTAA 771 0.4695 MGNHLCVIVKTKRKATTTNPTPPSSTLNLETILENYVPPHNINLAPLYTCEFCCESRPIYDSFSPEGCCHFYCTKCTLKYIVSKLQNNVLNLNCPESGCNGELSPHFCKQILPNFVFMWWERALCESVIPEKDKFYCPFHDCSALLLCCEPPRKKGAVVRASNCPHCKRNVCVQCRAPWHAEISCEKFQKLKNKNDDLMLDLAKRKKWRRCPNCKHYVEKKQGCDDMTCRCFHRFCYNCGASIYNGVGHDCFELDD 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01748 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 131 IPR013083 -
Pumo2g01748 256 SMART ibrneu5 193 251 IPR002867 GO:0008270
Pumo2g01748 256 SMART ibrneu5 117 185 IPR002867 GO:0008270
Pumo2g01748 256 ProSiteProfiles TRIAD supradomain profile. 46 255 IPR044066 -
Pumo2g01748 256 Pfam IBR domain, a half RING-finger domain 187 243 IPR002867 GO:0008270
Pumo2g01748 256 Pfam IBR domain, a half RING-finger domain 126 185 IPR002867 GO:0008270
Pumo2g01748 256 SUPERFAMILY RING/U-box 194 251 - -
Pumo2g01748 256 Gene3D - 182 255 - -
Pumo2g01748 256 FunFam RBR-type E3 ubiquitin transferase 46 131 - -
Pumo2g01748 256 CDD Rcat_RBR_unk 207 243 - -
Pumo2g01748 256 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 26 242 IPR031127 GO:0004842|GO:0016567
Pumo2g01748 256 SUPERFAMILY RING/U-box 47 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01748 Pumo-Chr2 32821491 32823488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01748 61 241 C3H Transcription Factor Family AT2G19610 32.275 1.88e-22 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01748 K11975 - rcu:8259039 246.514