Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01727 ATGGGGGCGAAGAAGCAGAGTCAGGGAGTGAAAAATGAGGGCAATGGCACCAACAGTGATGTTTTTGCTTCATGCTCCTTCTCCAGCCTTGGACTTGATTCCAATTTATGTGACCAACTTCGCGAGAGGTTGGGGTTTGAAGTTCCGACGCAGGTGCAAGCTCAAGCAATTCCTGTTATTCTCTCGGGGCATCATGCACTGGTAAATGCTGCAACGGGCACGGGGAAGACTGTTGCGTATTTGGCTCCGATTATTCATCACTTGCAGGGTTTTGAAAATCGGATTCAGCGCTCTGATGGAACATTTGCGTTGGTTCTTGTACCGACGCGGGAGCTATGTTTGCAGGTTTATGAAATTCTTCAAAAGTTATTGCATCGGTTTCATTGGATTGTTCCAGGATACATTATGGGTGGTGAAAATAGATCAAAGGAGAAAGCTAGGCTGCGCAAAGGCATATCAATTCTTATAGCAACTCCTGGGCGCCTTTTAGATCACTTGAAGAACACAACATCATTCTTGTACTCAAATCTACGCTGGATAATTTTTGATGAAGCTGATCGGATTTTGGAATTGGGATTCGGAAAAGATATAGAGGAAATACTAGATCTTTTAGGTTCAAGGAAAACAGGGCATGATGATCAAGAGAATACAGTTCCAACACACTCTAAAATTCAAAGACAGAATTTGCTTTTATCTGCCACCTTAAATGAGAAAGTGAACCACCTTGCTAAAATGAGTCTAGACAATCCAGTTATGATCGGTCTTGATGGTAAGAAAATAGAACCAATTTCAACAATTAAAAGGCTTGATCCTTCAGAATCTGATGAAGACAATGAAGATAAGTATTCCAGTAAAGTATCAACAGTTGGAGATTACAAAGTCCCTGTACAGTTGATCCAGAGATACATGAAAGTGCCTTGTGGTTCACGGCTTCCTGTACTTATTTCAATTCTAAAGCATCTCTTTGAAAGGGATCCTTCACAAAAGGTTGTTGTATTCTTTTCAACATGTGATGCAGTAGACTTTCACTATTCACTGTTAAGTGAATTTCAATTTTCATCCTATCCACAAACAGAAGGGGTCCGGCAGGTGTTTCTTGGATGCAAAACTTTCCGGTTACATGGTAATATGGAACAAGAGGACCGGAGAACCAGTTTTCAAGCCTTTAAAACTGAGAAATCTGCTTTGTTTTTGTCCACTGATGTTTCTGCTAGAGGATTGGATTTTCCAAAGGTTAGGTGCATCATACAATATGATTCTCCCGGGGAAGCTACTGAATATGTTCATAGAGTTGGTAGAACTGCTCGATTGGGTGAAAGAGGAGAGTCATTATTATTTCTGCAACCAGTTGAAATAGACTATTTACAGGACTTGGAGAAACATGGTGTCTCACTCACAGAGTATCCTGTCCTCAAAATGTTGGATAATTTTCCACTATATGGACAAAAGAACTACACAAAGAAGTCTTTTTTCTTAGAGTCACATCCCTGGGTCCTTTGTCTCCAGAAGGCACTTGAAGCCTTCATCGTGTCCAAGCCGGAGATGGATGAACTTGCCAAGAAGGCATTTTGCTCTTGGGTTCGTGCATACACAGCCCATCGTGGTGAGCTGAAAAGAATATTTATGATCAAGAAACTTCACTTGGGGCACGTAGCAAAAAGCTTTGCATTAAAACAACAACCCTCCTTAGTTGGACAGTCATTCCAAAAGCAAACTAAGAAGAGAAAGAGATTTGAGAAGAAAAATGGGTTGTCAAAAAAGAGAAAAGTTGTGAGCGTGTGA 1782 0.4091 MGAKKQSQGVKNEGNGTNSDVFASCSFSSLGLDSNLCDQLRERLGFEVPTQVQAQAIPVILSGHHALVNAATGTGKTVAYLAPIIHHLQGFENRIQRSDGTFALVLVPTRELCLQVYEILQKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLDHLKNTTSFLYSNLRWIIFDEADRILELGFGKDIEEILDLLGSRKTGHDDQENTVPTHSKIQRQNLLLSATLNEKVNHLAKMSLDNPVMIGLDGKKIEPISTIKRLDPSESDEDNEDKYSSKVSTVGDYKVPVQLIQRYMKVPCGSRLPVLISILKHLFERDPSQKVVVFFSTCDAVDFHYSLLSEFQFSSYPQTEGVRQVFLGCKTFRLHGNMEQEDRRTSFQAFKTEKSALFLSTDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPVEIDYLQDLEKHGVSLTEYPVLKMLDNFPLYGQKNYTKKSFFLESHPWVLCLQKALEAFIVSKPEMDELAKKAFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGQSFQKQTKKRKRFEKKNGLSKKRKVVSV 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01727 593 SMART ultradead3 45 266 IPR014001 -
Pumo2g01727 593 CDD SF2_C_DEAD 298 447 - -
Pumo2g01727 593 Pfam DEAD/DEAH box helicase 50 241 IPR011545 GO:0003676|GO:0005524
Pumo2g01727 593 Pfam Domain of unknown function (DUF4217) 502 562 IPR025313 -
Pumo2g01727 593 PANTHER RNA HELICASE 23 566 - -
Pumo2g01727 593 CDD DEADc_DDX31 36 254 - -
Pumo2g01727 593 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 57 253 IPR014001 -
Pumo2g01727 593 SMART helicmild6 341 438 IPR001650 -
Pumo2g01727 593 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 313 485 IPR001650 -
Pumo2g01727 593 SMART DUF4217_3 500 565 IPR025313 -
Pumo2g01727 593 Pfam Helicase conserved C-terminal domain 316 438 IPR001650 -
Pumo2g01727 593 Gene3D - 309 590 IPR027417 -
Pumo2g01727 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 459 IPR027417 -
Pumo2g01727 593 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 181 189 IPR000629 -
Pumo2g01727 593 Gene3D - 2 256 IPR027417 -
Pumo2g01727 593 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 25 54 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01727 Pumo-Chr2 32424945 32431555 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01727 45 447 Eukaryotic Initiation Factors Gene Family AT5G11200 27.739 2.87e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01727 K14806 - gmx:100805157 1101.66