Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01726 ATGAAGGCTCCTCCCAATGGTTACTTGCCTAATTCTGGCGAAGGGGAAAGGAAGACCATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCACTGGTTTCTTTACCTCCTGCTGGAAGTCTTGTGGTTTACTTCCCTCAAGGACACAGTGAGCAAGTTGCAGCATCCATGCAAAAGGAGGCTGACTTCATACCTAGTTATCCTAACCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGCCCTGCACGCTGATCCTGAAACGGACGAGGTCTATGCACAGATGACCCTTCAACCTGTAAATAAATATGACAAGGAAGCAATATTGGCATCAGACATGGGTCTCAAACAAAACCTACAACCTACTGAGTTCTTTTGCAAAACTCTTACAGCTAGTGACACAAGCACTCATGGTGGTTTTTCTGTGCCTCGTAGAGCTGCTGAGAAAATATTCCCACCTCTGGATTTTTCAATGCAACCTCCAGCTCAGGAGATTGTAGCCAAAGATTTGCATGACAATACATGGACATTTAGACATATTTATCGCGGACAACCAAAGAGGCATCTATTGACTACTGGTTGGAGTGTCTTTGTTAGCACAAAAAGGCTGTTTGCTGGAGATTCAGTTCTATTTATCAGAGATGAAAAACAACAACTTCTTTTAGGTATTAAGAGGGCTAATAGACAGCAACCAGCACTATCTTCATCAGTAATTTCCAGTGACAGCATGCATATTGGCATCCTTGCTGCTGCAGCTCATGCTGCTTCAAATAATAGCCCATTTACTATATTTTATAATCCAAGGGCCAGCCCTTCTGAATTTGTAATTCCATTGGCCAAGTATAATAAGGCCCTGTACAATCAAGTTTCCCTTGGAATGAGATTCAGAATGATGTTTGAGACTGAGGAGTCTGGGGTACGCAGATATATGGGTACAATCACAGGGATCAGTGACTTGGATCCTGTCCGATGGAAGAGTTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGCCCGAGCAGGGTTTCAATTTGGGATATTGAACCAGTAGTGACTCCTTTCTACATTTGTCCTCCTCCATTTTTTAGGCCCAAGTTCCCCAAGCAGCCAGGAATGCCAGATGATGAGTCTGATATAGAAAATGCTTTCAAGAGAGCTATGCCCTGGCTTGGAGATGACCTTGGCATGAAGGACGCCTCAAGTTCAGTCTTCCCTGGTTTTAGTTTGATGCAATGGATGAGCATGCAGCAGAATAATCAGTTCTCTGCTGCCCAATCTGGATTTATACCCCCATCCATGCTTTCATCCAATACAATGCATGGTAACCTTACCACTGATGATCCATCCAAATTATTGAGCTTTCAAGCTCCTGTCCTCTCTGCACCAAATCTTCAATTTAACAAACCTAATTTACCAAACCAAGTAAACCAATTGCAACAAACCCCAACATCATGGCCTCCACAGCAGCAGCAACAGCAGAAGCTGCAGTCGTTGTTGCAAACACCCTTAAACCCGCTCCAGCAGCAGCAACAGAGGCAACAACAGCTGCCTGTACCACAAAACCTGTCACAACCACAGCAACAACAACCCCAAATGCCTCAACAGAGAGCACAACAGCCACAACAACAGCAACAGCAGCAGCAGTCGTGTCAACAGACCATCATGAATAACGGGGCAGTTGCTTCTAACCAGATTCCAAATCAGTGTGTACAGCAACCAGTAACATACTCACAGCTTCAGCAACAGCAATTACTCTCAGGAAGTATCCCACCCCAACAAAGTTTTCAATCGCCCAATAAGAATACATTGCTGATGACATCCTTACCACAAGACTCACAGTTTCAGCAACAAATAGACCAGCAAGCTAGTCTCTTGCAGAGGCAGCAGCAGCAGCAACAGACACAGTTGCAATCATCTCCATTGCAGTTATTGCAACAAAGCTTGTCACAGAGAGCACCACAGCAACCACAAACGACTCAAATGTCACAGCAAAACAGCTCAGAGCAACAACCACAGTTACAGTTGCTACAGAAATTGCAGCAGCAACAACAGCAGCAGCAGCAACAGCAACTCCTTTCTACTTCTAGCCCACTTTTGCAGTCTCAGCTTCTACAGCAACAAAATACTCATCAACAAAACCAGCAATTGCCGCAACTGCCTCTATCACAGGGTCATCAGCCTCAACAGCTTGGCAACAATTCTTTCTCAATGGAGAAGCTTCTCAGTGGCAACAACTACTCATCTTCATCTCTGATGCAAACACAGCAGCTTTCTGTGAACCAACCCCATAATACACAGAAATCACTAACTAATACTAGAGCTCCCTCTACTCTTACAGATGGAGATGCCCCATCATGCTCAACGTCACCATCTACTAATAACTGCCAGATATCACCTCCAAATTTGATGAAAAGAAATCAACAAGTACCAGCCACATTAGGAGGACCTTCGGTAGTTGAACCCCCCAATCATCTGATGCAGGAGCTTCATAGCAAGTCTGAGATGCAGATCAAACATGAATTACCCAGTGTAAGAGGACCTGACCAGCTCAAGTACAAAGGGACAATTGCTGATCAGCTGGAAGCTTCTTCTGGAACATCTTACTGTATTGATCCTAATAATATCCACCAGAACTTTCAACTTCCCAACTTCTGCATGGATGGGGATGTCCAATCACACCCAAGAAATAATCTTCCATTTGCCTCTAATCTTGATGGATTAACTCCTGATACTTTGCTATCGAGAGGGTATGATTCTCAAAAAGATTTTCAAAACTTGCTGTCCAATTATGGTGGTGCTCCAAGAGACATTGAAACTGAGCTGTCCACTGCTGCCATTAGTTCACAGCCATTTGGGGTGCCAGACATGCCTTTTAAGCCTGGATGCTCAAGTGATATTGCCATCAATGATCCTGGGGTTTTGAATAATGGCTTGTGGGCTAATCAGACTCAACGAATGCGAACATATACCAAGGTTCAAAAATGTGGCTCTGTTGGAAGATGTATTGATGTCACCCGTTACAAGGGATATGATGAACTCCGGAATGATTTGGCTCGGATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCAAAGGACTGAGTGGAAACTAGTATATGTGGATCATGAAAATGACATTCTTCTTGTTGGCGATGACCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTGTCATCTGCTGAGGTACAGCAAATGAGCTTGGATGGGGATTTAGGTCATGTTCCAGTCCCCAATCAAGCTTGTAGTGGGACAGATAATGGCAATGCATGGAGGGGACAGTATGATGATAACTCTGCAGCCTCATTTAATCGATAA 3366 0.4427 MKAPPNGYLPNSGEGERKTINSELWHACAGPLVSLPPAGSLVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAILASDMGLKQNLQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRANRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPSEFVIPLAKYNKALYNQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKSSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWLGDDLGMKDASSSVFPGFSLMQWMSMQQNNQFSAAQSGFIPPSMLSSNTMHGNLTTDDPSKLLSFQAPVLSAPNLQFNKPNLPNQVNQLQQTPTSWPPQQQQQQKLQSLLQTPLNPLQQQQQRQQQLPVPQNLSQPQQQQPQMPQQRAQQPQQQQQQQQSCQQTIMNNGAVASNQIPNQCVQQPVTYSQLQQQQLLSGSIPPQQSFQSPNKNTLLMTSLPQDSQFQQQIDQQASLLQRQQQQQQTQLQSSPLQLLQQSLSQRAPQQPQTTQMSQQNSSEQQPQLQLLQKLQQQQQQQQQQQLLSTSSPLLQSQLLQQQNTHQQNQQLPQLPLSQGHQPQQLGNNSFSMEKLLSGNNYSSSSLMQTQQLSVNQPHNTQKSLTNTRAPSTLTDGDAPSCSTSPSTNNCQISPPNLMKRNQQVPATLGGPSVVEPPNHLMQELHSKSEMQIKHELPSVRGPDQLKYKGTIADQLEASSGTSYCIDPNNIHQNFQLPNFCMDGDVQSHPRNNLPFASNLDGLTPDTLLSRGYDSQKDFQNLLSNYGGAPRDIETELSTAAISSQPFGVPDMPFKPGCSSDIAINDPGVLNNGLWANQTQRMRTYTKVQKCGSVGRCIDVTRYKGYDELRNDLARMFGIEGQLEDPQRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGHVPVPNQACSGTDNGNAWRGQYDDNSAASFNR 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01726 1121 Gene3D - 289 360 - -
Pumo2g01726 1121 MobiDBLite consensus disorder prediction 470 557 - -
Pumo2g01726 1121 FunFam Auxin response factor 289 361 - -
Pumo2g01726 1121 SUPERFAMILY CAD & PB1 domains 1008 1072 - -
Pumo2g01726 1121 Gene3D - 989 1083 - -
Pumo2g01726 1121 MobiDBLite consensus disorder prediction 654 682 - -
Pumo2g01726 1121 ProSiteProfiles PB1 domain profile. 994 1087 IPR000270 GO:0005515
Pumo2g01726 1121 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pumo2g01726 1121 Pfam AUX/IAA family 991 1080 IPR033389 -
Pumo2g01726 1121 CDD B3_DNA 125 217 IPR003340 GO:0003677
Pumo2g01726 1121 SMART B3_2 126 228 IPR003340 GO:0003677
Pumo2g01726 1121 MobiDBLite consensus disorder prediction 745 807 - -
Pumo2g01726 1121 FunFam Auxin response factor 124 228 - -
Pumo2g01726 1121 FunFam Auxin response factor 989 1083 - -
Pumo2g01726 1121 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Pumo2g01726 1121 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Pumo2g01726 1121 Gene3D - 123 227 IPR015300 -
Pumo2g01726 1121 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 1083 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pumo2g01726 1121 MobiDBLite consensus disorder prediction 1099 1121 - -
Pumo2g01726 1121 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01726 Pumo-Chr2 32372780 32381543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01726 1 487 B3 DNA Binding Superfamily AT1G19220 82.957 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pumo2g01726 AUX_IAA 2.4e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01726 K14486 - gmx:100804628 944.495