Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01724 ATGGTGAAGCCGATGAGCGTGGAAAAACCTGCGGAAGAACGAAGTGTTTCATCATCGTACAGAGGAGTACGGAAGAGGAAGTGGGGGAAATACGTGTCGGAAATTAGGCTACCCAACTGCCGTCAAAGGATTTGGTTGGGTTCCTACGACAGCGCCGAGAAGGCGGCGCGTGCGTTCGACGCGGCCATGTTCTGCTTACGTGGCAGCGGCGCCAGGTTTAATTTCCCGAGCGACCCGCCAAACATCGCCGGCGGGAGAAACATGACGCCCACTCAGATTCAGATCGCCGCGGCGCGTTTCGCCAATTCGGAGCCCCCAAAGGAGTGTTCGGGTTCGGGTCAACCCGTGGAGTCTTTAACTTCGGATGGGGAAACGACGTCGTCGTTGCCTTTGGACAGTATTAGTAATAATACTGATACATCGTCTCCTCCTTTTTCAGACGTGACGGTCCAAAACGACACCGAATTACCATGGTTTCCGGATCTGTTTTCGGATCTCGGGTCGGGTAATTTAATACCCGATTTCTCCGATTTTCCGAGCTTCGACGATTTCAGCCGCGATTTCTTCATGCCGGATATTACAAGTTTCGATTACGGAGAAGAGAACTTGGATGGGTTGATAATTCAGGACTCGTTCTTGTGGAATTTCTAA 651 0.5161 MVKPMSVEKPAEERSVSSSYRGVRKRKWGKYVSEIRLPNCRQRIWLGSYDSAEKAARAFDAAMFCLRGSGARFNFPSDPPNIAGGRNMTPTQIQIAAARFANSEPPKECSGSGQPVESLTSDGETTSSLPLDSISNNTDTSSPPFSDVTVQNDTELPWFPDLFSDLGSGNLIPDFSDFPSFDDFSRDFFMPDITSFDYGEENLDGLIIQDSFLWNF 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01724 216 CDD AP2 18 76 IPR001471 GO:0003700|GO:0006355
Pumo2g01724 216 MobiDBLite consensus disorder prediction 107 144 - -
Pumo2g01724 216 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Pumo2g01724 216 MobiDBLite consensus disorder prediction 1 20 - -
Pumo2g01724 216 Gene3D AP2/ERF domain 19 77 IPR036955 GO:0003700|GO:0006355
Pumo2g01724 216 Pfam AP2 domain 19 68 IPR001471 GO:0003700|GO:0006355
Pumo2g01724 216 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Pumo2g01724 216 MobiDBLite consensus disorder prediction 1 24 - -
Pumo2g01724 216 MobiDBLite consensus disorder prediction 101 144 - -
Pumo2g01724 216 FunFam Ethylene-responsive transcription factor 2 18 77 - -
Pumo2g01724 216 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 147 - -
Pumo2g01724 216 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Pumo2g01724 216 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Pumo2g01724 216 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01724 Pumo-Chr2 32331145 32332267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01724 15 216 AP2-EREBP Transcription Factor Family AT1G19210 44.550 8.26e-52 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pumo2g01724 AP2 2.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01724 - - gmx:100802508 306.605