Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01708 ATGCAGAAGAAGTCAGCATTGCCGCTTAGCGACGCCAATGCGAACAAGAGGAAGGAATTGCGCAGCAAGGAAACGTTGGTGAAGCTTCTAAGATGGCATTTTGGGTACCCTGATTTCAGGGGCATGCAATTGGACGCTATTCAAGCTGTGCTCTCAGGAAAGGACTGTTTTTGTCTTATGCCAACTGGGGGAGGCAAGTCGATGTGTTATCAGATCCCTGCATTGGCAAAAACAGGAATTGTGCTTGTCGTTTGTCCTTTAATAGGTGAATCGCATTCTTCTTTTATAATTTTTGAAAACCAAGTAATGGCACTAAAGGAGAAAGGAATTGCGGCAGAATTTCTCTCCTCAACGAAAACAACAGATGCAAAAGTAAAGATTCACGAGGACCTTGATTCTGGAAAACCTTCTACAAGGCTGCTATATGTGACTCCAGAGTTGATAGCAACACCAGGGTTTATGTCAAAGCTGACAAAGATTTATAGTAGGGGGTTGCTAAATCTCATTGCCATAGATGAGGCGCATTGCATCTCAACTTGGGGTCATGATTTCAGACCTAGCTACCGTAAGCTTTCATCTTTGAGAAGCCACCTACCAGATGTACCAATATTAGCTCTGACTGCTACTGCCGTGCCTAAGGTTCAGAAGGATGTAGTTGAATCCTTGCAGATGCAAAATCCATTAATACTCAAGTCTTCATTTAATCGTCCTAATATATATTATGAAGTTAGATACAAAGATCTATTGGATGATGCTTATGCTGATTTATCTGATACACTCAAATCTCTGGGAGATGTCTGTGCAATAGTGTACTGCCTTGAACGTTCAATGTGTGATGACTTGTCAACTAATCTATCCCAAAGTGGCATTTCATGTGCTGCTTATCATGCAGGATTGAATAATAAAATGCGAACTTCGGTGTTAGATGATTGGATTTCTTCTAAGATAAAAGTTGTTGTTGCTACTGTTGCTTTTGGGTATGGCATTGATAGAAAGGATGTTAGAATTGTGTGCCACTTCAATATTCCCAAGTCAATGGAAGCATTCTATCAAGAGTCAGGCAGAGCAGGTCGTGATCAATTGCCATCTAGAAGTCTGTTGTACTATGGGGTAGATGATCGCAGAAGAATGGAATTTATATTAAGTAAATCGGCGAGCAAGAAGTCACAGTCATCTAGTTCACAAGAAGAATCATCCAAAATGTCCCTGATTGCTTTCAATCAGATGGTTGAATATTGTGAAGGATCTGGATGTCGCAGGAAAAGGATTCTTGAGAGTTTTGGGGAACAGGTAACTGCATCACTGTGTGGAAAAACATGTGATGCCTGCAGACATCCGAACTTAGTTGCCAGATATTTGGAGGATCTCACAACTGCTTGTGCTCTACGCCAGAAAAATGGTTCTTCTCGAGTTTTTATGACCAGTTCCACTGATGCAACTGACGGAGAACAGTTATCTGAATTCTGGAATCAGGATGAGGAAGCAAGTGGATCAGAGGAAGATATATCTGATTCAGATGATGGTAATGAGGTTGTCAACAACCTAACCCGGTCAAAGCTTCAATCCAAATTGGGAGTAAATGAAAAGCTTGCTATGTTACAACGGGCAGAAGAAAACTTCTATCGAAATGATAACGCTTACAAACAGAGCAACAAAGTTGACAAAAATGCTATTTCTAATCCAATGCGAGAATCAAGCAGGCAAAGGTTACAGAATGCTCTAAAACAGGTTCAGCAACGGCTTGACAACTTCAAGATTGAAATGGAAACGTCAGCATCTTTCCTTGAAGATGAATGCTACAAGAAATATGGCAAGGCTGGCAAATCATTCTATTATTCGCAAGTGGCAAGTACTGTAAGATGGCTGACAACTGCAAGTTCTATCGAACTGATGAACCGACTTTGTGCAATTAATGCTTCCACGTCAATGAATGTCTTTTCTGAAGCTGAACAACCACTCACCCCAGCTGATCAGCCCCTCACACCAGCTGAACAGCCCTAA 2001 0.4133 MQKKSALPLSDANANKRKELRSKETLVKLLRWHFGYPDFRGMQLDAIQAVLSGKDCFCLMPTGGGKSMCYQIPALAKTGIVLVVCPLIGESHSSFIIFENQVMALKEKGIAAEFLSSTKTTDAKVKIHEDLDSGKPSTRLLYVTPELIATPGFMSKLTKIYSRGLLNLIAIDEAHCISTWGHDFRPSYRKLSSLRSHLPDVPILALTATAVPKVQKDVVESLQMQNPLILKSSFNRPNIYYEVRYKDLLDDAYADLSDTLKSLGDVCAIVYCLERSMCDDLSTNLSQSGISCAAYHAGLNNKMRTSVLDDWISSKIKVVVATVAFGYGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSRSLLYYGVDDRRRMEFILSKSASKKSQSSSSQEESSKMSLIAFNQMVEYCEGSGCRRKRILESFGEQVTASLCGKTCDACRHPNLVARYLEDLTTACALRQKNGSSRVFMTSSTDATDGEQLSEFWNQDEEASGSEEDISDSDDGNEVVNNLTRSKLQSKLGVNEKLAMLQRAEENFYRNDNAYKQSNKVDKNAISNPMRESSRQRLQNALKQVQQRLDNFKIEMETSASFLEDECYKKYGKAGKSFYYSQVASTVRWLTTASSIELMNRLCAINASTSMNVFSEAEQPLTPADQPLTPAEQP 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01708 666 Gene3D - 236 462 IPR027417 -
Pumo2g01708 666 FunFam ATP-dependent DNA helicase 20 235 - -
Pumo2g01708 666 PANTHER DNA HELICASE RECQ FAMILY MEMBER 16 607 - -
Pumo2g01708 666 CDD SF2_C_RecQ 236 369 - -
Pumo2g01708 666 Pfam RecQ zinc-binding 373 444 IPR032284 -
Pumo2g01708 666 Pfam Helicase conserved C-terminal domain 263 358 IPR001650 -
Pumo2g01708 666 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 229 IPR027417 -
Pumo2g01708 666 SMART ultradead3 35 244 IPR014001 -
Pumo2g01708 666 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 47 228 IPR014001 -
Pumo2g01708 666 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 234 461 IPR027417 -
Pumo2g01708 666 FunFam RecQ family DNA helicase 236 461 - -
Pumo2g01708 666 Gene3D - 3 235 IPR027417 -
Pumo2g01708 666 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 259 400 IPR001650 -
Pumo2g01708 666 NCBIfam RecQ family ATP-dependent DNA helicase 29 448 IPR004589 GO:0004386|GO:0006310
Pumo2g01708 666 MobiDBLite consensus disorder prediction 493 507 - -
Pumo2g01708 666 MobiDBLite consensus disorder prediction 491 511 - -
Pumo2g01708 666 Coils Coil 567 587 - -
Pumo2g01708 666 SMART helicmild6 279 360 IPR001650 -
Pumo2g01708 666 Pfam DEAD/DEAH box helicase 42 215 IPR011545 GO:0003676|GO:0005524
Pumo2g01708 666 CDD DEXHc_RecQ 28 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01708 Pumo-Chr2 32050731 32060160 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01708 32 358 Eukaryotic Initiation Factors Gene Family AT3G19760 20.977 9.93e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01708 K10901 - gmx:100819601 1182.16